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      Isolation, Extraction, Purification, and Molecular Characterization for Thermostable α-Amylase from Locally Isolated Bacillus Species in Sudan

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      Biochemistry Research International
      Hindawi

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          Abstract

          The aim of this study was to isolate some soil bacteria strain that produced α-amylase and subsequent extraction and purification. One hundred soil samples were collected from different geographical areas in Khartoum State such as north Omdurman, Toti Island, and Soba. Samples were analyzed for starch hydrolyzing bacteria. Among several bacteria isolated, Bacillus cereus and Bacillus licheniformis were identified as active α-amylase producers. Both bacteria showed a large zone of clearance of 20 mm when grown on starch-agar plates. The identity was conducted using biochemical characterization and confirmed by sequencing their 16S-rDNA. The constitutive nature of amylase was proved by amplification of the amylase gene from the genome of B. licheniformis. The α-amylase activity from the spent medium of B. cereus and B. licheniformis was optimized at pH 8.0 and temperature of 45°C and 65°C, respectively. The α-amylase produced by both bacteria is alkalophilic and thermophilic. The experiments confirmed that B. licheniformis can be a good source of amylase for industrial applications in Sudan.

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          PROTEIN MEASUREMENT WITH THE FOLIN PHENOL REAGENT

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            16S ribosomal DNA amplification for phylogenetic study.

            A set of oligonucleotide primers capable of initiating enzymatic amplification (polymerase chain reaction) on a phylogenetically and taxonomically wide range of bacteria is described along with methods for their use and examples. One pair of primers is capable of amplifying nearly full-length 16S ribosomal DNA (rDNA) from many bacterial genera; the additional primers are useful for various exceptional sequences. Methods for purification of amplified material, direct sequencing, cloning, sequencing, and transcription are outlined. An obligate intracellular parasite of bovine erythrocytes, Anaplasma marginale, is used as an example; its 16S rDNA was amplified, cloned, sequenced, and phylogenetically placed. Anaplasmas are related to the genera Rickettsia and Ehrlichia. In addition, 16S rDNAs from several species were readily amplified from material found in lyophilized ampoules from the American Type Culture Collection. By use of this method, the phylogenetic study of extremely fastidious or highly pathogenic bacterial species can be carried out without the need to culture them. In theory, any gene segment for which polymerase chain reaction primer design is possible can be derived from a readily obtainable lyophilized bacterial culture.
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              Bergey's Manual of Determinative Bacteriology

              Based on the data contained in the four-volume Bergey's Manual of Systematic Bacteriology, BMDB-9 also includes new genera and species, new combinations, and new taxa published through the January 1992 issue of the IJSB. Users will find short general descriptions that encompass all organisms by Groups; shape and size, Gram reaction, other pertinent morphological features, motility and flagella, relations to oxygen, basic type of metabolism, carbon and energy sources, habitat and ecology. BMDB-9 also includes discussions of difficulties in identification, keys or tables to genera and species, genus descriptions, synonyms, other nomenclatural changes, and numerous illustrations.
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                Author and article information

                Contributors
                Journal
                Biochem Res Int
                Biochem Res Int
                BRI
                Biochemistry Research International
                Hindawi
                2090-2247
                2090-2255
                2021
                24 May 2021
                : 2021
                : 6670380
                Affiliations
                Department of Microbiology, Central Laboratory, Ministry of Higher Education and Scientific Research, P.O. Box 7099, Khartoum, Sudan
                Author notes

                Academic Editor: Gary Lorigan

                Author information
                https://orcid.org/0000-0003-0858-287X
                https://orcid.org/0000-0002-6661-2988
                Article
                10.1155/2021/6670380
                8169242
                34123426
                4dbf3708-3b15-4092-8061-98d66ee65a31
                Copyright © 2021 Maha A. Rakaz et al.

                This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 11 November 2020
                : 19 April 2021
                : 15 May 2021
                Funding
                Funded by: Ministry of Higher Education and Scientific Research
                Categories
                Research Article

                Biochemistry
                Biochemistry

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