43
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Classical Statistics and Statistical Learning in Imaging Neuroscience

      review-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Brain-imaging research has predominantly generated insight by means of classical statistics, including regression-type analyses and null-hypothesis testing using t-test and ANOVA. Throughout recent years, statistical learning methods enjoy increasing popularity especially for applications in rich and complex data, including cross-validated out-of-sample prediction using pattern classification and sparsity-inducing regression. This concept paper discusses the implications of inferential justifications and algorithmic methodologies in common data analysis scenarios in neuroimaging. It is retraced how classical statistics and statistical learning originated from different historical contexts, build on different theoretical foundations, make different assumptions, and evaluate different outcome metrics to permit differently nuanced conclusions. The present considerations should help reduce current confusion between model-driven classical hypothesis testing and data-driven learning algorithms for investigating the brain with imaging techniques.

          Related collections

          Most cited references147

          • Record: found
          • Abstract: not found
          • Article: not found

          The ASA's Statement onp-Values: Context, Process, and Purpose

            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Distributed and overlapping representations of faces and objects in ventral temporal cortex.

            The functional architecture of the object vision pathway in the human brain was investigated using functional magnetic resonance imaging to measure patterns of response in ventral temporal cortex while subjects viewed faces, cats, five categories of man-made objects, and nonsense pictures. A distinct pattern of response was found for each stimulus category. The distinctiveness of the response to a given category was not due simply to the regions that responded maximally to that category, because the category being viewed also could be identified on the basis of the pattern of response when those regions were excluded from the analysis. Patterns of response that discriminated among all categories were found even within cortical regions that responded maximally to only one category. These results indicate that the representations of faces and objects in ventral temporal cortex are widely distributed and overlapping.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              A genome-wide association study identifies novel risk loci for type 2 diabetes.

              Type 2 diabetes mellitus results from the interaction of environmental factors with a combination of genetic variants, most of which were hitherto unknown. A systematic search for these variants was recently made possible by the development of high-density arrays that permit the genotyping of hundreds of thousands of polymorphisms. We tested 392,935 single-nucleotide polymorphisms in a French case-control cohort. Markers with the most significant difference in genotype frequencies between cases of type 2 diabetes and controls were fast-tracked for testing in a second cohort. This identified four loci containing variants that confer type 2 diabetes risk, in addition to confirming the known association with the TCF7L2 gene. These loci include a non-synonymous polymorphism in the zinc transporter SLC30A8, which is expressed exclusively in insulin-producing beta-cells, and two linkage disequilibrium blocks that contain genes potentially involved in beta-cell development or function (IDE-KIF11-HHEX and EXT2-ALX4). These associations explain a substantial portion of disease risk and constitute proof of principle for the genome-wide approach to the elucidation of complex genetic traits.
                Bookmark

                Author and article information

                Contributors
                Journal
                Front Neurosci
                Front Neurosci
                Front. Neurosci.
                Frontiers in Neuroscience
                Frontiers Media S.A.
                1662-4548
                1662-453X
                06 October 2017
                2017
                : 11
                : 543
                Affiliations
                [1] 1Department of Psychiatry, Psychotherapy and Psychosomatics, Medical Faculty, RWTH Aachen University , Aachen, Germany
                [2] 2Translational Brain Medicine, Jülich-Aachen Research Alliance (JARA) , Aachen, Germany
                [3] 3Parietal Team, Institut National de Recherche en Informatique et en Automatique (INRIA) , Gif-sur-Yvette, France
                Author notes

                Edited by: Yaroslav O. Halchenko, Dartmouth College, United States

                Reviewed by: Matthew Brett, University of Cambridge, United Kingdom; Jean-Baptiste Poline, University of California, Berkeley, United States

                *Correspondence: Danilo Bzdok danilo.bzdok@ 123456rwth-aachen.de

                This article was submitted to Brain Imaging Methods, a section of the journal Frontiers in Neuroscience

                Article
                10.3389/fnins.2017.00543
                5635056
                29056896
                5024cd06-6238-4d93-8c34-2196f8bd535d
                Copyright © 2017 Bzdok.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 12 April 2017
                : 19 September 2017
                Page count
                Figures: 5, Tables: 1, Equations: 0, References: 222, Pages: 23, Words: 19941
                Categories
                Neuroscience
                Review

                Neurosciences
                neuroimaging,data science,epistemology,statistical inference,machine learning,p-value,rosetta stone

                Comments

                Comment on this article