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      Hearing of malaria mosquitoes is modulated by a beta-adrenergic-like octopamine receptor which serves as insecticide target

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          Abstract

          Malaria mosquitoes acoustically detect their mating partners within large swarms that form transiently at dusk. Indeed, male malaria mosquitoes preferably respond to female flight tones during swarm time. This phenomenon implies a sophisticated context- and time-dependent modulation of mosquito audition, the mechanisms of which are largely unknown. Using transcriptomics, we identify a complex network of candidate neuromodulators regulating mosquito hearing in the species Anopheles gambiae. Among them, octopamine stands out as an auditory modulator during swarm time. In-depth analysis of octopamine auditory function shows that it affects the mosquito ear on multiple levels: it modulates the tuning and stiffness of the flagellar sound receiver and controls the erection of antennal fibrillae. We show that two α- and β-adrenergic-like octopamine receptors drive octopamine’s auditory roles and demonstrate that the octopaminergic auditory control system can be targeted by insecticides. Our findings highlight octopamine as key for mosquito hearing and mating partner detection and as a potential novel target for mosquito control.

          Abstract

          Malaria mosquitoes use their ears to detect the flight tones of mating partners in the swarm as part of the courtship ritual. Here, the authors describe the auditory role of octopamine as a modulator of auditory plasticity in malaria mosquitoes and identify the main receptors involved in this process.

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          Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

          In comparative high-throughput sequencing assays, a fundamental task is the analysis of count data, such as read counts per gene in RNA-seq, for evidence of systematic changes across experimental conditions. Small replicate numbers, discreteness, large dynamic range and the presence of outliers require a suitable statistical approach. We present DESeq2, a method for differential analysis of count data, using shrinkage estimation for dispersions and fold changes to improve stability and interpretability of estimates. This enables a more quantitative analysis focused on the strength rather than the mere presence of differential expression. The DESeq2 package is available at http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html. Electronic supplementary material The online version of this article (doi:10.1186/s13059-014-0550-8) contains supplementary material, which is available to authorized users.
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            Near-optimal probabilistic RNA-seq quantification.

            We present kallisto, an RNA-seq quantification program that is two orders of magnitude faster than previous approaches and achieves similar accuracy. Kallisto pseudoaligns reads to a reference, producing a list of transcripts that are compatible with each read while avoiding alignment of individual bases. We use kallisto to analyze 30 million unaligned paired-end RNA-seq reads in <10 min on a standard laptop computer. This removes a major computational bottleneck in RNA-seq analysis.
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              MultiQC: summarize analysis results for multiple tools and samples in a single report

              Motivation: Fast and accurate quality control is essential for studies involving next-generation sequencing data. Whilst numerous tools exist to quantify QC metrics, there is no common approach to flexibly integrate these across tools and large sample sets. Assessing analysis results across an entire project can be time consuming and error prone; batch effects and outlier samples can easily be missed in the early stages of analysis. Results: We present MultiQC, a tool to create a single report visualising output from multiple tools across many samples, enabling global trends and biases to be quickly identified. MultiQC can plot data from many common bioinformatics tools and is built to allow easy extension and customization. Availability and implementation: MultiQC is available with an GNU GPLv3 license on GitHub, the Python Package Index and Bioconda. Documentation and example reports are available at http://multiqc.info Contact: phil.ewels@scilifelab.se
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                Author and article information

                Contributors
                joerg.albert@uni-oldenburg.de
                marta.andres@ucl.ac.uk
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                19 July 2023
                19 July 2023
                2023
                : 14
                : 4338
                Affiliations
                [1 ]GRID grid.83440.3b, ISNI 0000000121901201, Ear Institute, , University College London, ; 332 Gray’s Inn Road, London, WC1X 8EE UK
                [2 ]GRID grid.451388.3, ISNI 0000 0004 1795 1830, The Francis Crick Institute, ; 1 Midland Road, London, NW1 1AT UK
                [3 ]GRID grid.27476.30, ISNI 0000 0001 0943 978X, Graduate School of Science, , Nagoya University, ; Nagoya, Aichi 464-8602 Japan
                [4 ]GRID grid.27476.30, ISNI 0000 0001 0943 978X, Institute for Advanced Research, , Nagoya University, ; Nagoya, Aichi 464-8601 Japan
                [5 ]GRID grid.414543.3, ISNI 0000 0000 9144 642X, Vector Control Product Testing Unit (VCPTU), Environmental Health and Ecological Sciences, , Ifakara Health Institute, ; P.O. Box 74, Bagamoyo, Tanzania
                [6 ]GRID grid.416786.a, ISNI 0000 0004 0587 0574, Swiss Tropical and Public Health Institute, Socinstrasse 57, ; PO Box, CH-4002, Basel, Switzerland
                [7 ]GRID grid.6612.3, ISNI 0000 0004 1937 0642, University of Basel, Petersplatz 1, ; CH-4001 Basel, Switzerland
                [8 ]GRID grid.451346.1, ISNI 0000 0004 0468 1595, The Nelson Mandela African Institution of Science and Technology (NM-AIST), ; P.O. Box 447, Tengeru, Arusha Tanzania
                [9 ]GRID grid.5560.6, ISNI 0000 0001 1009 3608, Cluster of Excellence Hearing4all, Sensory Physiology & Behaviour Group, Department for Neuroscience, School of Medicine and Health Sciences, , Carl Von Ossietzky University Oldenburg, Carl Von Ossietzky Str. 9-11, ; 26111 Oldenburg, Germany
                Author information
                http://orcid.org/0000-0001-6402-9038
                http://orcid.org/0000-0001-8880-4422
                http://orcid.org/0000-0002-6186-211X
                http://orcid.org/0000-0002-3366-7712
                http://orcid.org/0000-0002-0938-6654
                http://orcid.org/0000-0003-1910-3408
                http://orcid.org/0000-0003-4369-2898
                Article
                40029
                10.1038/s41467-023-40029-y
                10356864
                37468470
                51de6200-99f2-4bd5-8202-719799c2fc7a
                © The Author(s) 2023

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 11 October 2022
                : 6 July 2023
                Funding
                Funded by: FundRef https://doi.org/10.13039/100010661, EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020);
                Award ID: 752472
                Award ID: 648709
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100000265, RCUK | Medical Research Council (MRC);
                Award ID: MR/S015493/1
                Award Recipient :
                Funded by: Wellcome ISSF grant, 204841/Z/16/Z UCL Global Challenges Research Fund
                Funded by: FundRef https://doi.org/10.13039/501100000268, RCUK | Biotechnology and Biological Sciences Research Council (BBSRC);
                Award ID: BB/V007866/1
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100000854, Human Frontier Science Program (HFSP);
                Award ID: RGP0033/2021
                Award Recipient :
                Categories
                Article
                Custom metadata
                © Springer Nature Limited 2023

                Uncategorized
                auditory system,developing world,circadian mechanisms,animal physiology,malaria
                Uncategorized
                auditory system, developing world, circadian mechanisms, animal physiology, malaria

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