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      Genetic structure of two Prosopis species in Chaco areas: A lack of allelic diversity diagnosis and insights into the allelic conservation of the affected species

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          Abstract

          The Gran Chaco is the largest continuous region of the South American dry forest, spanning Argentina, Paraguay, Bolivia, and Brazil. Prosopis rubriflora and Prosopis ruscifolia are typical tree species of chaquenian area forests, which have been subjected to continuous fragmentation caused by cattle raising. This study evaluated P. rubriflora and P. ruscifolia in areas with varying levels of disturbance. We investigated the contemporary genetic diversities of both species in areas with distinct anthropogenic disturbances. Even with a lower heterozygote frequency, disturbed areas can provide important storage for alleles, allowing the maintenance of diversity. The genetic diversity of P. rubriflora was surprisingly similar to that of P. ruscifolia ( H = 0.59 and H e = 0.60, respectively) even with very different distribution ranges of both species. However, P. ruscifolia exhibited a higher intrapopulation fixation index than P. rubriflora. P. rubriflora showed evidence of bottlenecking in 64% of the sampled areas, while P. ruscifolia showed such evidence in 36% of the sampled areas. Additionally, P. rubriflora had two distinct populations due to its disjunctive geographic distribution, whereas P. ruscifolia had a single population that exhibited few signs of population structure in some areas, possibly due to the main pollinators presenting a short range of dispersion. Our results suggest that 42 Chaco areas should be conserved to retain the minimum of 500 individuals necessary to maintain genetic diversity for 100–1,000 generations. This study improves our understanding of these two Prosopis species and provides information for the conservation of their genetic diversities.

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          Most cited references38

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          Estimation of average heterozygosity and genetic distance from a small number of individuals.

          M Nei (1978)
          The magnitudes of the systematic biases involved in sample heterozygosity and sample genetic distances are evaluated, and formulae for obtaining unbiased estimates of average heterozygosity and genetic distance are developed. It is also shown that the number of individuals to be used for estimating average heterozygosity can be very small if a large number of loci are studied and the average heterozygosity is low. The number of individuals to be used for estimating genetic distance can also be very small if the genetic distance is large and the average heterozygosity of the two species compared is low.
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            The genetics of inbreeding depression.

            Inbreeding depression - the reduced survival and fertility of offspring of related individuals - occurs in wild animal and plant populations as well as in humans, indicating that genetic variation in fitness traits exists in natural populations. Inbreeding depression is important in the evolution of outcrossing mating systems and, because intercrossing inbred strains improves yield (heterosis), which is important in crop breeding, the genetic basis of these effects has been debated since the early twentieth century. Classical genetic studies and modern molecular evolutionary approaches now suggest that inbreeding depression and heterosis are predominantly caused by the presence of recessive deleterious mutations in populations.
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              Linkage disequilibrium--understanding the evolutionary past and mapping the medical future.

              Linkage disequilibrium--the nonrandom association of alleles at different loci--is a sensitive indicator of the population genetic forces that structure a genome. Because of the explosive growth of methods for assessing genetic variation at a fine scale, evolutionary biologists and human geneticists are increasingly exploiting linkage disequilibrium in order to understand past evolutionary and demographic events, to map genes that are associated with quantitative characters and inherited diseases, and to understand the joint evolution of linked sets of genes. This article introduces linkage disequilibrium, reviews the population genetic processes that affect it and describes some of its uses. At present, linkage disequilibrium is used much more extensively in the study of humans than in non-humans, but that is changing as technological advances make extensive genomic studies feasible in other species.
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                Author and article information

                Contributors
                anete@unicamp.br
                Journal
                Ecol Evol
                Ecol Evol
                10.1002/(ISSN)2045-7758
                ECE3
                Ecology and Evolution
                John Wiley and Sons Inc. (Hoboken )
                2045-7758
                07 June 2018
                July 2018
                : 8
                : 13 ( doiID: 10.1002/ece3.2018.8.issue-13 )
                : 6558-6574
                Affiliations
                [ 1 ] Department of Plant Biology Institute of Biology University of Campinas – UNICAMP Campinas SP Brazil
                [ 2 ] Center for Molecular Biology and Genetic Engineering (CBMEG) University of Campinas – UNICAMP Campinas SP Brazil
                [ 3 ] Center of Biological and Health Sciences (CCBS) Federal University of Mato Grosso do Sul – UFMS Campo Grande MS Brazil
                [ 4 ] São Paulo Agency of Technology and Agro‐Business Piracicaba SP Brazil
                [ 5 ] Department of Forestry Engineering University of the Midwest Irati PR Brazil
                Author notes
                [*] [* ] Correspondence

                Anete P. de Souza, University of Campinas ‐ UNICAMP, SP, Brazil.

                Email: anete@ 123456unicamp.br

                Article
                ECE34137
                10.1002/ece3.4137
                6053563
                5300b068-f0b5-4dff-957b-27ab726b19a8
                © 2018 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 11 April 2017
                : 09 March 2018
                : 19 March 2018
                Page count
                Figures: 8, Tables: 6, Pages: 17, Words: 13829
                Funding
                Funded by: Conselho Nacional de Desenvolvimento Científico e Tecnológico
                Funded by: Coordenação de Aperfeiçoamento de Pessoal de Nível Superior and Brazilian Agricultural Research Corporation
                Funded by: Fundação de Amparo à Pesquisa do Estado de São Paulo
                Award ID: 2008/52197‐4
                Award ID: 2010/51242‐6
                Funded by: Coordenação de Aperfeiçoamento de Pessoal de Nível Superior ‐ Computational Biology Program
                Funded by: Coordenação de Aperfeiçoamento de Pessoal de Nível Superior – CNPq (Casadinho/Procad)
                Award ID: 552352/2011‐0
                Categories
                Original Research
                Original Research
                Custom metadata
                2.0
                ece34137
                July 2018
                Converter:WILEY_ML3GV2_TO_NLMPMC version:version=5.4.3 mode:remove_FC converted:20.07.2018

                Evolutionary Biology
                conservation genetics,population genetics,prosopis rubriflora,prosopis ruscifolia,south pantanal

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