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      Arctic Small Rodents Have Diverse Diets and Flexible Food Selection

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          Abstract

          The ecology of small rodent food selection is poorly understood, as mammalian herbivore food selection theory has mainly been developed by studying ungulates. Especially, the effect of food availability on food selection in natural habitats where a range of food items are available is unknown. We studied diets and selectivity of grey-sided voles ( Myodes rufocanus) and tundra voles ( Microtus oeconomus), key herbivores in European tundra ecosystems, using DNA metabarcoding, a novel method enabling taxonomically detailed diet studies. In order to cover the range of food availabilities present in the wild, we employed a large-scale study design for sampling data on food availability and vole diets. Both vole species had ingested a range of plant species and selected particularly forbs and grasses. Grey-sided voles also selected ericoid shrubs and tundra voles willows. Availability of a food item rarely affected its utilization directly, although seasonal changes of diets and selection suggest that these are positively correlated with availability. Moreover, diets and selectivity were affected by availability of alternative food items. These results show that the focal sub-arctic voles have diverse diets and flexible food preferences and rarely compensate low availability of a food item with increased searching effort. Diet diversity itself is likely to be an important trait and has previously been underrated owing to methodological constraints. We suggest that the roles of alternative food item availability and search time limitations for small rodent feeding ecology should be investigated.

          Nomenclature

          Annotated Checklist of the Panarctic Flora (PAF), Vascular plants. Available at: http://nhm2.uio.no/paf/, accessed 15.6.2012.

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          Most cited references10

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          Collapsing population cycles.

          During the past two decades population cycles in voles, grouse and insects have been fading out in Europe. Here, we discuss the cause and implication of these changes. Several lines of evidence now point to climate forcing as the general underlying cause. However, how climate interacts with demography to induce regime shifts in population dynamics is likely to differ among species and ecosystems. Herbivores with high-amplitude population cycles, such as voles, lemmings, snowshoe hares and forest Lepidoptera, form the heart of terrestrial food web dynamics. Thus, collapses of these cycles are also expected to imply collapses of important ecosystem functions, such as the pulsed flows of resources and disturbances.
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            Quantification of damage in DNA recovered from highly degraded samples – a case study on DNA in faeces

            Background Poorly preserved biological tissues have become an important source of DNA for a wide range of zoological studies. Measuring the quality of DNA obtained from these samples is often desired; however, there are no widely used techniques available for quantifying damage in highly degraded DNA samples. We present a general method that can be used to determine the frequency of polymerase blocking DNA damage in specific gene-regions in such samples. The approach uses quantitative PCR to measure the amount of DNA present at several fragment sizes within a sample. According to a model of random degradation the amount of available template will decline exponentially with increasing fragment size in damaged samples, and the frequency of DNA damage (λ) can be estimated by determining the rate of decline. Results The method is illustrated through the analysis of DNA extracted from sea lion faecal samples. Faeces contain a complex mixture of DNA from several sources and different components are expected to be differentially degraded. We estimated the frequency of DNA damage in both predator and prey DNA within individual faecal samples. The distribution of fragment lengths for each target fit well with the assumption of a random degradation process and, in keeping with our expectations, the estimated frequency of damage was always less in predator DNA than in prey DNA within the same sample (mean λpredator = 0.0106 per nucleotide; mean λprey = 0.0176 per nucleotide). This study is the first to explicitly define the amount of template damage in any DNA extracted from faeces and the first to quantify the amount of predator and prey DNA present within individual faecal samples. Conclusion We present an approach for characterizing mixed, highly degraded PCR templates such as those often encountered in ecological studies using non-invasive samples as a source of DNA, wildlife forensics investigations and ancient DNA research. This method will allow researchers to measure template quality in order to evaluate alternate sources of DNA, different methods of sample preservation and different DNA extraction protocols. The technique could also be applied to study the process of DNA decay.
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              The future of environmental DNA in ecology.

              The contributions of environmental DNA to ecology are reviewed, focusing on diet, trophic interactions, species distributions and biodiversity assessment. Environmental DNA has the potential to dramatically improve quantitative studies in these fields. Achieving this, however, will require large investments of time and money into developing the relevant databases, models, and software. © 2012 Blackwell Publishing Ltd.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2013
                27 June 2013
                : 8
                : 6
                : e68128
                Affiliations
                [1 ]Department of Arctic and Marine Biology, University of Tromsø, Tromsø, Norway
                [2 ]Laboratoire d’ECologie Alpine, Université Joseph Fourier, Grenoble, France
                The University of Wollongong, Australia
                Author notes

                Competing Interests: Ludovic Gielly is one of the co-inventors of a patent concerning g-h primers and the subsequent use of the P6 loop of the chloroplast trnL (UAA) intron for plant identification using degraded template DNA. The patent has the following numbers: CA 2581347 (Canada Patent), 2006/040448 (PCT Patent), EP1797201 (EPO Patent), 20090081646 and 20110143354 (both United States Patent Application). These patents, titled “Universal primers and their use for detecting and identifying plant materials in complex mixtures”, only restrict commercial applications and have no impact on the use of this locus by academic researchers. Hence, the patents do not alter the authors’ adherence to the PLOS ONE policies on sharing data and materials.

                Conceived and designed the experiments: EMS RAI NGY VTR KAB LG. Performed the experiments: EMS LG VTR KAB. Analyzed the data: EMS NGY. Wrote the paper: EMS VTR RAI KAB NGY.

                Article
                PONE-D-12-34498
                10.1371/journal.pone.0068128
                3694920
                23826371
                56fa10bd-d325-4657-93cd-e878189eb944
                Copyright @ 2013

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 6 November 2012
                : 28 May 2013
                Page count
                Pages: 13
                Funding
                This study was funded by Norwegian Research Council ( http://www.forskningsradet.no/, project Ecosystem Finnmark), Oskar Huttunen Foundation http://www.oskhuttusensaatio.net/, PhD-scholarship for EMS) and Norwegian Directorate for Nature Management ( http://http://www.dirnat.no/, support for EMS). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Veterinary Science
                Animal Management
                Animal Nutrition
                Animal Types
                Small Animals
                Wildlife
                Biology
                Ecology
                Community Ecology
                Food Web Structure
                Niche Construction
                Trophic Interactions
                Ecological Environments
                Terrestrial Environments
                Zoology
                Animal Behavior
                Mammalogy

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                Uncategorized

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