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      Precise CAG repeat contraction in a Huntington’s Disease mouse model is enabled by gene editing with SpCas9-NG

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          Abstract

          The clustered regularly interspaced palindromic repeats (CRISPR)/Cas9 system is a research hotspot in gene therapy. However, the widely used Streptococcus pyogenes Cas9 (WT-SpCas9) requires an NGG protospacer adjacent motif (PAM) for target recognition, thereby restricting targetable disease mutations. To address this issue, we recently reported an engineered SpCas9 nuclease variant (SpCas9-NG) recognizing NGN PAMs. Here, as a feasibility study, we report SpCas9-NG-mediated repair of the abnormally expanded CAG repeat tract in Huntington’s disease (HD). By targeting the boundary of CAG repeats with SpCas9-NG, we precisely contracted the repeat tracts in HD-mouse-derived embryonic stem (ES) cells. Further, we confirmed the recovery of phenotypic abnormalities in differentiated neurons and animals produced from repaired ES cells. Our study shows that SpCas9-NG can be a powerful tool for repairing abnormally expanded CAG repeats as well as other disease mutations that are difficult to access with WT-SpCas9.

          Abstract

          Seiya Oura and Taichi Noda et al. overcome the challenge of gene editing in CAG repeats, such as those causing Huntington’s Disease, using their recently developed SpCas9-NG variant. They demonstrate that SpCas9-NG can precisely edit and contract the CAG repeat tracks in a Huntington’s Disease mouse model, opening new avenues for research in this disease.

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          Most cited references54

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          Fiji: an open-source platform for biological-image analysis.

          Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.
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            A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.

            Clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated (Cas) systems provide bacteria and archaea with adaptive immunity against viruses and plasmids by using CRISPR RNAs (crRNAs) to guide the silencing of invading nucleic acids. We show here that in a subset of these systems, the mature crRNA that is base-paired to trans-activating crRNA (tracrRNA) forms a two-RNA structure that directs the CRISPR-associated protein Cas9 to introduce double-stranded (ds) breaks in target DNA. At sites complementary to the crRNA-guide sequence, the Cas9 HNH nuclease domain cleaves the complementary strand, whereas the Cas9 RuvC-like domain cleaves the noncomplementary strand. The dual-tracrRNA:crRNA, when engineered as a single RNA chimera, also directs sequence-specific Cas9 dsDNA cleavage. Our study reveals a family of endonucleases that use dual-RNAs for site-specific DNA cleavage and highlights the potential to exploit the system for RNA-programmable genome editing.
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              Multiplex genome engineering using CRISPR/Cas systems.

              Functional elucidation of causal genetic variants and elements requires precise genome editing technologies. The type II prokaryotic CRISPR (clustered regularly interspaced short palindromic repeats)/Cas adaptive immune system has been shown to facilitate RNA-guided site-specific DNA cleavage. We engineered two different type II CRISPR/Cas systems and demonstrate that Cas9 nucleases can be directed by short RNAs to induce precise cleavage at endogenous genomic loci in human and mouse cells. Cas9 can also be converted into a nicking enzyme to facilitate homology-directed repair with minimal mutagenic activity. Lastly, multiple guide sequences can be encoded into a single CRISPR array to enable simultaneous editing of several sites within the mammalian genome, demonstrating easy programmability and wide applicability of the RNA-guided nuclease technology.
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                Author and article information

                Contributors
                ikawa@biken.osaka-u.ac.jp
                Journal
                Commun Biol
                Commun Biol
                Communications Biology
                Nature Publishing Group UK (London )
                2399-3642
                23 June 2021
                23 June 2021
                2021
                : 4
                : 771
                Affiliations
                [1 ]GRID grid.136593.b, ISNI 0000 0004 0373 3971, Department of Experimental Genome Research, Research Institute for Microbial Diseases, , Osaka University, ; Osaka, Japan
                [2 ]GRID grid.136593.b, ISNI 0000 0004 0373 3971, Graduate School of Pharmaceutical Sciences, Osaka University, ; Osaka, Japan
                [3 ]GRID grid.274841.c, ISNI 0000 0001 0660 6749, Division of Reproductive Biology, Institute of Resource Development and Analysis, Kumamoto University, ; Kumamoto, Japan
                [4 ]GRID grid.410827.8, ISNI 0000 0000 9747 6806, Department of Integrative Physiology, , Shiga University of Medical Science, ; Otsu, Shiga Japan
                [5 ]GRID grid.26999.3d, ISNI 0000 0001 2151 536X, Department of Biological Sciences, , Graduate School of Science, The University of Tokyo, ; Tokyo, Japan
                [6 ]GRID grid.26999.3d, ISNI 0000 0001 2151 536X, Department of Structural Biology, , Research center for Advanced Science and Technology, The University of Tokyo, ; Tokyo, Japan
                [7 ]GRID grid.419280.6, ISNI 0000 0004 1763 8916, Department of Degenerative Neurological Diseases, , National Institute of Neuroscience, National Center of Neurology and Psychiatry, ; Kodaira, Japan
                [8 ]GRID grid.136593.b, ISNI 0000 0004 0373 3971, Department of Neurotherapeutics, , Osaka University Graduate School of Medicine, ; Osaka, Japan
                [9 ]GRID grid.258622.9, ISNI 0000 0004 1936 9967, Department of Neurology, , Kindai University Faculty of Medicine, ; Osaka, Japan
                [10 ]GRID grid.26999.3d, ISNI 0000 0001 2151 536X, Laboratory of Reproductive Systems Biology, Institute of Medical Science, The University of Tokyo, ; Tokyo, Japan
                Author information
                http://orcid.org/0000-0002-7606-732X
                http://orcid.org/0000-0003-0260-7861
                http://orcid.org/0000-0001-9859-6217
                Article
                2304
                10.1038/s42003-021-02304-w
                8222283
                34163001
                59bcc1a6-4445-4df8-bfe6-3ab5c327db77
                © The Author(s) 2021

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 13 August 2020
                : 3 June 2021
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100001691, MEXT | Japan Society for the Promotion of Science (JSPS);
                Award ID: JP19J21619
                Award ID: JP18K14612
                Award ID: JP20H03172
                Award ID: 26291010
                Award ID: 15H01463
                Award ID: JP19H05750
                Award ID: 21H04753
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100007449, Takeda Science Foundation;
                Funded by: The Nakajima Foundation
                Funded by: FundRef https://doi.org/10.13039/100009619, Japan Agency for Medical Research and Development (AMED);
                Award ID: JP20am0401005h0002
                Award ID: JP19ek0109222
                Award ID: JP20am0401005h0002
                Award ID: JP20gm5010001
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100000865, Bill and Melinda Gates Foundation (Bill & Melinda Gates Foundation);
                Award ID: INV-001902
                Award Recipient :
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                Custom metadata
                © The Author(s) 2021

                genetic engineering,huntington's disease
                genetic engineering, huntington's disease

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