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      Isolation and enzyme bioprospection of bacteria associated to Bruguiera cylindrica, a mangrove plant of North Sumatra, Indonesia

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          Highlights

          • Bruguiera cylindrica is a mangrove plant in North Sumatra with limited information on its microbial endophytes.

          • An enzyme bioprospection study was conducted revealing Vibrio alginolyticus as a prominent proteolytic strain.

          • Vibrio alginolyticus Jme3-20 produced a multitude of extracellular enzymes such as amylase, cellulase, chitinase, phosphatase, and urease.

          • This is the first report on finding Vibrio alginolyticus from mangrove area of North Sumatra.

          Abstract

          Mangrove-associated bacteria are of industrial interest due to their diverse and versatile enzyme properties. This study investigates the culturable bacteria from a wide range of habitat in a Bruguiera cylindrica mangrove ecosystem in North Sumatra. Screening of extracellular hydrolytic enzymes showed multiple potential traits in amylase, cellulase, chitinase, phosphatase, protease, and urease production by bacterial isolates. Molecular identification based on 16S rDNA region of a potential strain, Vibrio alginolyticus Jme3−20 is then reported as a newly proteolytic agent. The strain also showed a stable growth under salinity (NaCl) stress with considerable phosphate solubilization activities. Protease activity was enhanced by optimizing the 0.5 % (w/v) sucrose and soy peptone in the fermentation medium. SDS-PAGE and zymogram analysis showed the presence of a 35-kDa MW protease. Hence, our study revealed important insights into the bacterial diversity and activity in mangrove ecosystems, evidencing the importance of microbial exploration in this ecosystem.

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          Microbial Phosphorus Solubilization and Its Potential for Use in Sustainable Agriculture

          The use of excess conventional Phosphorus (P) fertilizers to improve agricultural productivity, in order to meet constantly increasing global food demand, potentially causes surface and ground water pollution, waterway eutrophication, soil fertility depletion, and accumulation of toxic elements such as high concentration of selenium (Se), arsenic (As) in the soil. Quite a number of soil microorganisms are capable of solubilizing/mineralizing insoluble soil phosphate to release soluble P and making it available to plants. These microorganisms improve the growth and yield of a wide variety of crops. Thus, inoculating seeds/crops/soil with Phosphate Solubilizing Microorganisms (PSM) is a promising strategy to improve world food production without causing any environmental hazard. Despite their great significance in soil fertility improvement, phosphorus-solubilizing microorganisms have yet to replace conventional chemical fertilizers in commercial agriculture. A better understanding of recent developments in PSM functional diversity, colonizing ability, mode of actions and judicious application should facilitate their use as reliable components of sustainable agricultural systems. In this review, we discussed various soil microorganisms that have the ability to solubilize phosphorus and hence have the potential to be used as bio fertilizers. The mechanisms of inorganic phosphate solubilization by PSM and the mechanisms of organic phosphorus mineralization are highlighted together with some factors that determine the success of this technology. Finally we provide some indications that the use of PSM will promote sustainable agriculture and conclude that this technology is ready for commercial exploitation in various regions worldwide.
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            Developments in the use of Bacillus species for industrial production.

            Bacillus species continue to be dominant bacterial workhorses in microbial fermentations. Bacillus subtilis (natto) is the key microbial participant in the ongoing production of the soya-based traditional natto fermentation, and some Bacillus species are on the Food and Drug Administration's GRAS (generally regarded as safe) list. The capacity of selected Bacillus strains to produce and secrete large quantities (20-25 g/L) of extracellular enzymes has placed them among the most important industrial enzyme producers. The ability of different species to ferment in the acid, neutral, and alkaline pH ranges, combined with the presence of thermophiles in the genus, has lead to the development of a variety of new commercial enzyme products with the desired temperature, pH activity, and stability properties to address a variety of specific applications. Classical mutation and (or) selection techniques, together with advanced cloning and protein engineering strategies, have been exploited to develop these products. Efforts to produce and secrete high yields of foreign recombinant proteins in Bacillus hosts initially appeared to be hampered by the degradation of the products by the host proteases. Recent studies have revealed that the slow folding of heterologous proteins at the membrane-cell wall interface of Gram-positive bacteria renders them vulnerable to attack by wall-associated proteases. In addition, the presence of thiol-disulphide oxidoreductases in B. subtilis may be beneficial in the secretion of disulphide-bond-containing proteins. Such developments from our understanding of the complex protein translocation machinery of Gram-positive bacteria should allow the resolution of current secretion challenges and make Bacillus species preeminent hosts for heterologous protein production. Bacillus strains have also been developed and engineered as industrial producers of nucleotides, the vitamin riboflavin, the flavor agent ribose, and the supplement poly-gamma-glutamic acid. With the recent characterization of the genome of B. subtilis 168 and of some related strains, Bacillus species are poised to become the preferred hosts for the production of many new and improved products as we move through the genomic and proteomic era.
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              ON TYROSINE AND TRYPTOPHANE DETERMINATIONS IN PROTEINS

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                Author and article information

                Contributors
                Journal
                Biotechnol Rep (Amst)
                Biotechnol Rep (Amst)
                Biotechnology Reports
                Elsevier
                2215-017X
                20 April 2021
                June 2021
                20 April 2021
                : 30
                : e00617
                Affiliations
                [a ]Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Sumatera Utara, Medan, 20155, Indonesia
                [b ]Research Center for Biotechnology, Indonesian Institute of Science, Jl. Raya Bogor Km. 46, Cibinong, West Java, 16911, Indonesia
                [c ]Department of Marine Science, Faculty of Fisheries and Marine Science, Universitas Diponegoro, Jl. Prof. Soedarto S.H., Tembalang, Semarang, 50275, Central Java, Indonesia
                [d ]Natural Product Laboratory, Integrated Laboratory for Research and Services, Universitas Diponegoro, Jl. Prof. Soedarto S.H., Tembalang, Semarang, 50275, Central Java, Indonesia
                [e ]Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture CENA, University of Sao Paulo USP, Piracicaba, Brazil
                [f ]Department of Agricultural Sciences, University of Helsinki, Helsinki, 00014, Finland
                [g ]Universidad Autónoma de Nuevo León, Facultad de Ciencias Biológicas, San Nicolás de los Garza, Nuevo León, Mexico
                [h ]Faculty of Teacher Training and Education, Universitas Labuhanbatu, Rantauprapat, Indonesia
                [i ]Department of Biochemistry, College of Basic Science and Humanities, SD Agricultural University, Gujarat, 385506, India
                [j ]Department of Geography, Universitas Negeri Semarang, Semarang, 50229, Indonesia
                [k ]Faculty of Animal Husbandry, Padjadjaran University, Jatinangor, 45363, Indonesia
                [l ]Biology Study Program, Faculty of Agriculture, Universitas Timor, Kefamenanu, 85613, Indonesia
                [m ]Faculty of Mathematics and Natural Sciences, Halu Oleo University, Jalan H.E.A. Mokodompit, Kampus Baru, Kampus Hijau Bumi Tridharma Anduonohu, Kendari, 93232, Indonesia
                Author notes
                [* ]Corresponding author at: Jl. Bioteknologi No. 1, Kampus USU, Padang Bulan, Kota Medan, North Sumatra, 20155, Indonesia. dwisuryanto@ 123456usu.ac.id
                Article
                S2215-017X(21)00033-3 e00617
                10.1016/j.btre.2021.e00617
                8121877
                5a11b041-04b6-4057-9f86-8137a48922fe
                © 2021 The Authors

                This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

                History
                : 9 June 2020
                : 5 November 2020
                : 8 April 2021
                Categories
                Articles from the Special Issue on Endophytes in biotechnology – the toolbox bridging plant and microbial metabolism; Edited by Gashaw Mamo

                bruguiera cylindrica,extracellular enzymes,mangrove,protease,vibrio alginolyticus

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