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      Hydra Mesoglea Proteome Identifies Thrombospondin as a Conserved Component Active in Head Organizer Restriction

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          Abstract

          Thrombospondins (TSPs) are multidomain glycoproteins with complex matricellular functions in tissue homeostasis and remodeling. We describe a novel role of TSP as a Wnt signaling target in the basal eumetazoan Hydra. Proteome analysis identified Hydra magnipapillata TSP (HmTSP) as a major component of the cnidarian mesoglea. In general, the domain organization of cnidarian TSPs is related to the pentameric TSPs of bilaterians, and in phylogenetic analyses cnidarian TSPs formed a separate clade of high sequence diversity. HmTSP expression in polyps was restricted to the hypostomal tip and tentacle bases that harbor Wnt-regulated organizer tissues. In the hypostome, HmTSP- and Wnt3-expressing cells were identical or in close vicinity to each other, and regions of ectopic tentacle formation induced by pharmacological β-Catenin activation (Alsterpaullone) corresponded to foci of HmTSP expression. Chromatin immunoprecipitation (ChIP) confirmed binding of Hydra TCF to conserved elements in the HmTSP promotor region. Accordingly, β-Catenin knockdown by siRNAs reduced normal HmTSP expression at the head organizer. In contrast, knockdown of HmTSP expression led to increased numbers of ectopic organizers in Alsterpaullone-treated animals, indicating a negative regulatory function. Our data suggest an unexpected role for HmTSP as a feedback inhibitor of Wnt signaling during Hydra body axis patterning and maintenance.

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          Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.

          Sea anemones are seemingly primitive animals that, along with corals, jellyfish, and hydras, constitute the oldest eumetazoan phylum, the Cnidaria. Here, we report a comparative analysis of the draft genome of an emerging cnidarian model, the starlet sea anemone Nematostella vectensis. The sea anemone genome is complex, with a gene repertoire, exon-intron structure, and large-scale gene linkage more similar to vertebrates than to flies or nematodes, implying that the genome of the eumetazoan ancestor was similarly complex. Nearly one-fifth of the inferred genes of the ancestor are eumetazoan novelties, which are enriched for animal functions like cell signaling, adhesion, and synaptic transmission. Analysis of diverse pathways suggests that these gene "inventions" along the lineage leading to animals were likely already well integrated with preexisting eukaryotic genes in the eumetazoan progenitor.
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            The Amphimedon queenslandica genome and the evolution of animal complexity.

            Sponges are an ancient group of animals that diverged from other metazoans over 600 million years ago. Here we present the draft genome sequence of Amphimedon queenslandica, a demosponge from the Great Barrier Reef, and show that it is remarkably similar to other animal genomes in content, structure and organization. Comparative analysis enabled by the sequencing of the sponge genome reveals genomic events linked to the origin and early evolution of animals, including the appearance, expansion and diversification of pan-metazoan transcription factor, signalling pathway and structural genes. This diverse 'toolkit' of genes correlates with critical aspects of all metazoan body plans, and comprises cell cycle control and growth, development, somatic- and germ-cell specification, cell adhesion, innate immunity and allorecognition. Notably, many of the genes associated with the emergence of animals are also implicated in cancer, which arises from defects in basic processes associated with metazoan multicellularity.
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              Solid phase peptide synthesis utilizing 9-fluorenylmethoxycarbonyl amino acids.

              9-Fluorenylmethoxycarbonyl (Fmoc) amino acids were first used for solid phase peptide synthesis a little more than a decade ago. Since that time, Fmoc solid phase peptide synthesis methodology has been greatly enhanced by the introduction of a variety of solid supports, linkages, and side chain protecting groups, as well as by increased understanding of solvation conditions. These advances have led to many impressive syntheses, such as those of biologically active and isotopically labeled peptides and small proteins. The great variety of conditions under which Fmoc solid phase peptide synthesis may be carried out represents a truly "orthogonal" scheme, and thus offers many unique opportunities for bioorganic chemistry.
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                Author and article information

                Contributors
                Jo.Adams@bristol.ac.uk
                suat.oezbek@cos.uni-heidelberg.de
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                6 August 2018
                6 August 2018
                2018
                : 8
                : 11753
                Affiliations
                [1 ]ISNI 0000 0001 2190 4373, GRID grid.7700.0, University of Heidelberg, Centre for Organismal Studies, Department of Molecular Evolution and Genomics, ; Im Neuenheimer Feld 230, 69120 Heidelberg, Germany
                [2 ]ISNI 0000 0004 1936 7603, GRID grid.5337.2, School of Biochemistry, , University of Bristol, Biomedical Sciences Building, University Walk, ; Bristol, BS8 1TD UK
                [3 ]ISNI 0000 0004 1936 7603, GRID grid.5337.2, School of Chemistry, Cantock’s Close, , University of Bristol, ; Bristol, BS8 1TS UK
                [4 ]ISNI 0000 0001 2151 8122, GRID grid.5771.4, Institute of Biochemistry and Center for Molecular Biosciences, , University of Innsbruck, ; Innrain 80-82, A-6020 Innsbruck, Austria
                [5 ]GRID grid.461742.2, Present Address: G200 Division of Applied Bioinformatics, , German Cancer Research Institute (DKFZ) and National Center for Tumor Diseases (NCT) Heidelberg, ; Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany
                [6 ]ISNI 0000 0001 2193 314X, GRID grid.8756.c, Present Address: School of Chemistry, , University of Glasgow, Joseph Black Building, University Avenue, ; Glasgow, G12 8QQ Scotland
                [7 ]ISNI 0000 0001 2312 1970, GRID grid.5132.5, Present Address: Leiden Institute of Chemistry, , Leiden University, ; POB 9502, NL-2300 RA Leiden, Netherlands
                Author information
                http://orcid.org/0000-0002-0394-3202
                http://orcid.org/0000-0002-2225-4947
                Article
                30035
                10.1038/s41598-018-30035-2
                6079037
                30082916
                60aab25b-55bc-4236-b8f7-fe3979731c89
                © The Author(s) 2018

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 11 September 2017
                : 23 July 2018
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100001659, Deutsche Forschungsgemeinschaft (German Research Foundation);
                Award ID: SFB 873/A-1
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100000265, Medical Research Council (MRC);
                Award ID: K018043
                Award Recipient :
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