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      Pocket delipidation induced by membrane tension or modification leads to a structurally analogous mechanosensitive channel state

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          Summary

          The mechanosensitive ion channel of large conductance MscL gates in response to membrane tension changes. Lipid removal from transmembrane pockets leads to a concerted structural and functional MscL response, but it remains unknown whether there is a correlation between the tension-mediated state and the state derived by pocket delipidation in the absence of tension. Here, we combined pulsed electron paramagnetic resonance spectroscopy and hydrogen-deuterium exchange mass spectrometry, coupled with molecular dynamics simulations under membrane tension, to investigate the structural changes associated with the distinctively derived states. Whether it is tension- or modification-mediated pocket delipidation, we find that MscL samples a similar expanded subconducting state. This is the final step of the delipidation pathway, but only an intermediate stop on the tension-mediated path, with additional tension triggering further channel opening. Our findings hint at synergistic modes of regulation by lipid molecules in membrane tension-activated mechanosensitive channels.

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          Highlights

          • Pocket delipidation of TM pockets stabilizes an expanded MscL state

          • HDX and EPR probe conformational transitions of MscL

          • Bilayer stretching MD independently generates a tension-activated state

          • Structural analogy between these states has implications in MS channel regulation

          Abstract

          Wang et al. demonstrate that delipidation of the MscL channel pockets by either membrane tension or modification stabilizes a structurally analogous expanded state. This is a crucial state in the mechanical activation pathway, hinting at direct links between tension-mediated and molecular activation in mechanosensitive ion channels.

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          The design, implementation, and capabilities of an extensible visualization system, UCSF Chimera, are discussed. Chimera is segmented into a core that provides basic services and visualization, and extensions that provide most higher level functionality. This architecture ensures that the extension mechanism satisfies the demands of outside developers who wish to incorporate new features. Two unusual extensions are presented: Multiscale, which adds the ability to visualize large-scale molecular assemblies such as viral coats, and Collaboratory, which allows researchers to share a Chimera session interactively despite being at separate locales. Other extensions include Multalign Viewer, for showing multiple sequence alignments and associated structures; ViewDock, for screening docked ligand orientations; Movie, for replaying molecular dynamics trajectories; and Volume Viewer, for display and analysis of volumetric data. A discussion of the usage of Chimera in real-world situations is given, along with anticipated future directions. Chimera includes full user documentation, is free to academic and nonprofit users, and is available for Microsoft Windows, Linux, Apple Mac OS X, SGI IRIX, and HP Tru64 Unix from http://www.cgl.ucsf.edu/chimera/. Copyright 2004 Wiley Periodicals, Inc.
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            VMD: Visual molecular dynamics

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                Author and article information

                Contributors
                Journal
                Structure
                Structure
                Structure(London, England:1993)
                Cell Press
                0969-2126
                1878-4186
                07 April 2022
                07 April 2022
                : 30
                : 4
                : 608-622.e5
                Affiliations
                [1 ]Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, UK
                [2 ]School of Biomedical Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
                [3 ]Biomedical Sciences Research Complex, School of Biology, University of St Andrews, St Andrews KY16 9ST, UK
                [4 ]School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
                [5 ]School of Physics and Astronomy, University of St Andrews, St Andrews KY16 9SS, UK
                [6 ]Leeds Institute of Cardiovascular and Metabolic Medicine, School of Medicine, University of Leeds, Leeds LS2 9NL, UK
                Author notes
                []Corresponding author c.pliotas@ 123456leeds.ac.uk
                [7]

                These authors contributed equally

                [8]

                Lead contact

                Article
                S0969-2126(21)00456-1
                10.1016/j.str.2021.12.004
                9033278
                34986323
                6c710e3a-77c7-4e9e-9e54-016c25d94603
                © 2021 The Authors

                This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

                History
                : 9 September 2021
                : 13 October 2021
                : 7 December 2021
                Categories
                Article

                Molecular biology
                lipids,mscl,mscs,mechanosensitive channels,epr spectroscopy,hdx,md,essem,mass spectrometry,force-from-lipid

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