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      A human erythrocytes hologram dataset for learning-based model training

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          Abstract

          This manuscript presents a paired dataset with experimental holograms and their corresponding reconstructed phase maps of human red blood cells (RBCs). The holographic images were recorded using an off-axis telecentric Digital Holographic Microscope (DHM). The imaging system consists of a 40 × /0.65NA infinity-corrected microscope objective (MO) lens and a tube lens (TL) with a focal distance of 200 mm, recording diffraction-limited holograms. A CMOS camera with dimensions of 1920 × 1200 pixels and a pixel pitch of 5.86 µm was located at the back focal plane of the TL lens, capturing image-plane holograms. The off-axis, telecentric, and diffraction-limited DHM system guarantees accurate quantitative phase maps. Initially comprising 300 holograms, the dataset was augmented to 36,864 instances, enabling the investigation (i.e., training and testing) of learning-based models to reconstruct aberration-free phase images from raw holograms. This dataset facilitates the training and testing of end-to-end models for quantitative phase imaging using DHM systems operating at the telecentric regime and non-telecentric DHM systems where the spherical wavefront has been compensated physically. In other words, this dataset holds promise for advancing investigations in digital holographic microscopy and computational imaging.

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          Most cited references18

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          Quantitative phase imaging in biomedicine

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            Phase recovery and holographic image reconstruction using deep learning in neural networks

            Phase recovery from intensity-only measurements forms the heart of coherent imaging techniques and holography. In this study, we demonstrate that a neural network can learn to perform phase recovery and holographic image reconstruction after appropriate training. This deep learning-based approach provides an entirely new framework to conduct holographic imaging by rapidly eliminating twin-image and self-interference-related spatial artifacts. This neural network-based method is fast to compute and reconstructs phase and amplitude images of the objects using only one hologram, requiring fewer measurements in addition to being computationally faster. We validated this method by reconstructing the phase and amplitude images of various samples, including blood and Pap smears and tissue sections. These results highlight that challenging problems in imaging science can be overcome through machine learning, providing new avenues to design powerful computational imaging systems.
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              Spatial filtering for zero-order and twin-image elimination in digital off-axis holography.

              Off-axis holograms recorded with a CCD camera are numerically reconstructed with a calculation of scalar diffraction in the Fresnel approximation. We show that the zero order of diffraction and the twin image can be digitally eliminated by means of filtering their associated spatial frequencies in the computed Fourier transform of the hologram. We show that this operation enhances the contrast of the reconstructed images and reduces the noise produced by parasitic reflections reaching the hologram plane with an incidence angle other than that of the object wave.
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                Author and article information

                Contributors
                Journal
                Data Brief
                Data Brief
                Data in Brief
                Elsevier
                2352-3409
                15 April 2024
                June 2024
                15 April 2024
                : 54
                : 110424
                Affiliations
                [a ]Applied Optics Group, School of Applied Sciences and Engineering EAFIT University, Medellin 050037, Colombia
                [b ]Electrical and Computer Engineering Department, University of Massachusetts – Dartmouth, USA
                Author notes
                [* ]Corresponding author. adoblas@ 123456umassd.edu
                Article
                S2352-3409(24)00393-7 110424
                10.1016/j.dib.2024.110424
                11068518
                38708305
                6ddf3488-e546-466c-b2b8-1ff81db69594
                © 2024 The Authors

                This is an open access article under the CC BY-NC license (http://creativecommons.org/licenses/by-nc/4.0/).

                History
                : 19 January 2024
                : 9 April 2024
                : 9 April 2024
                Categories
                Data Article

                experimental recording,digital holographic microscopy,quantitative phase imaging,interferometric techniques,biological specimens,red blood cells

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