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      Species delimitation in the Stenocereus griseus (Cactaceae) species complex reveals a new species, S. huastecorum

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          Abstract

          The Stenocereus griseus species complex (SGSC) has long been considered taxonomically challenging because the number of taxa belonging to the complex and their geographical boundaries remain poorly understood. Bayesian clustering and genetic distance-based methods were used based on nine microsatellite loci in 377 individuals of three main putative species of the complex. The resulting genetic clusters were assessed for ecological niche divergence and areolar morphology, particularly spination patterns. We based our species boundaries on concordance between genetic, ecological, and morphological data, and were able to resolve four species, three of them corresponding to S. pruinosus from central Mexico, S. laevigatus from southern Mexico, and S. griseus from northern South America. A fourth species, previously considered to be S. griseus and commonly misidentified as S. pruinosus in northern Mexico showed significant genetic, ecological, and morphological differentiation suggesting that it should be considered a new species, S. huastecorum, which we describe here. We show that population genetic analyses, ecological niche modeling, and morphological studies are complementary approaches for delimiting species in taxonomically challenging plant groups such as the SGSC.

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          The magnitudes of the systematic biases involved in sample heterozygosity and sample genetic distances are evaluated, and formulae for obtaining unbiased estimates of average heterozygosity and genetic distance are developed. It is also shown that the number of individuals to be used for estimating average heterozygosity can be very small if a large number of loci are studied and the average heterozygosity is low. The number of individuals to be used for estimating genetic distance can also be very small if the genetic distance is large and the average heterozygosity of the two species compared is low.
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            microsatellite analyser(MSA): a platform independent analysis tool for large microsatellite data sets

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              Bayesian clustering algorithms ascertaining spatial population structure: a new computer program and a comparison study

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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Funding acquisitionRole: Project administrationRole: ResourcesRole: SupervisionRole: Writing – original draftRole: Writing – review & editing
                Role: InvestigationRole: Methodology
                Role: InvestigationRole: MethodologyRole: ResourcesRole: Writing – original draftRole: Writing – review & editing
                Role: Project administrationRole: SupervisionRole: Writing – review & editing
                Role: ConceptualizationRole: MethodologyRole: Project administrationRole: Resources
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                17 January 2018
                2018
                : 13
                : 1
                : e0190385
                Affiliations
                [1 ] Instituto de Investigaciones en Ecosistemas y Sustentabilidad (IIES), Universidad Nacional Autónoma de México, Morelia, Michoacán, México
                [2 ] Centro De Investigación De Zonas Áridas (CIZA), Universidad Nacional Agraria La Molina, La Molina, Lima, Perú
                [3 ] Centro Universitario de Ciencias Biológicas y Agropecuarias (CUCBA), Universidad de Guadalajara, Zapopan, Jalisco, México
                [4 ] Instituto de Biología (IB), Universidad Nacional Autónoma de México, Coyoacán, Ciudad de México, México
                [5 ] Herbario de la Universidad de La Guajira, Riohacha, La Guajira, Colombia
                University of Arkansas, UNITED STATES
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                [¤]

                Current address: Facultad de Ciencias, Posgrado en Botánica Taxonómica Neotropical, Universidad de los Andes, Núcleo Universitario Pedro Rincón Gutiérrez, Mérida, Venezuela

                Author information
                http://orcid.org/0000-0002-8181-5118
                Article
                PONE-D-17-27623
                10.1371/journal.pone.0190385
                5771577
                29342184
                711cc3c3-0866-4a60-b001-eb1d0e8e036a
                © 2018 Alvarado-Sizzo et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 25 July 2017
                : 30 November 2017
                Page count
                Figures: 9, Tables: 2, Pages: 25
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/501100003141, Consejo Nacional de Ciencia y Tecnología;
                Award ID: 298299
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100003141, Consejo Nacional de Ciencia y Tecnología;
                Award ID: CB-2013-01-221800
                Funded by: funder-id http://dx.doi.org/10.13039/501100005739, Universidad Nacional Autónoma de México;
                Award ID: IN209214
                Funded by: funder-id http://dx.doi.org/10.13039/501100005739, Universidad Nacional Autónoma de México;
                Award ID: IN206217
                This study was supported by the Consejo Nacional de Ciencia y Tecnología (CONACYT), which funded the Research project CB-2013-01-221800 and provided a grant (298299) for Hernán Alvarado-Sizzo (URL: http://www.conacyt.gob.mx/) and the Program of Support to Research and Technological Innovation (PAPIIT), UNAM, Mexico (research projects IN209214 and IN206217). http://dgapa.unam.mx/index.php/impulso-a-la-investigacion/papiit. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
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                People and places
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                North America
                Mexico
                Biology and Life Sciences
                Ecology
                Ecological Niches
                Ecology and Environmental Sciences
                Ecology
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                Biology and Life Sciences
                Biogeography
                Ecology and Environmental Sciences
                Biogeography
                Earth Sciences
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                Evolutionary Biology
                Population Genetics
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                Genetics
                Population Genetics
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                Population Biology
                Population Genetics
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                Plant Science
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                All relevant data are within the paper and its Supporting Information files.

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