[1
]GRID grid.488675.0, ISNI 0000 0004 8337 9561, Africa Health Research Institute, ; Durban, South Africa
[2
]GRID grid.16463.36, ISNI 0000 0001 0723 4123, School of Laboratory Medicine and Medical Sciences, , University of KwaZulu-Natal, ; Durban, South Africa
[3
]GRID grid.1005.4, ISNI 0000 0004 4902 0432, Kirby Institute, , University of New South Wales, ; Sydney, New South Wales Australia
[4
]GRID grid.416657.7, ISNI 0000 0004 0630 4574, National Institute for Communicable Diseases of the National Health Laboratory Service,
; Johannesburg, South Africa
[5
]GRID grid.11951.3d, ISNI 0000 0004 1937 1135, SA MRC Antibody Immunity Research Unit, School of Pathology, Faculty of Health Sciences,
, University of the Witwatersrand, ; Johannesburg, South Africa
[6
]KwaZulu-Natal Research Innovation and Sequencing Platform, Durban, South Africa
[7
]GRID grid.11956.3a, ISNI 0000 0001 2214 904X, Centre for Epidemic Response and Innovation, School of Data Science and Computational
Thinking, , Stellenbosch University, ; Stellenbosch, South Africa
[8
]GRID grid.428428.0, ISNI 0000 0004 5938 4248, Centre for the AIDS Programme of Research in South Africa, ; Durban, South Africa
[9
]GRID grid.16463.36, ISNI 0000 0001 0723 4123, Department of Medical Microbiology, , University of KwaZulu-Natal, ; Durban, South Africa
[10
]GRID grid.7836.a, ISNI 0000 0004 1937 1151, Department of Integrative Biomedical Sciences, Faculty of Health Sciences, , University of Cape Town, ; Cape Town, South Africa
[11
]GRID grid.83440.3b, ISNI 0000000121901201, Division of Infection and Immunity, , University College London, ; London, UK
[12
]GRID grid.7836.a, ISNI 0000 0004 1937 1151, Institute of Infectious Disease and Molecular Medicine, , University of Cape Town, ; Cape Town, South Africa
[13
]GRID grid.16463.36, ISNI 0000 0001 0723 4123, Department of Infectious Diseases, Nelson R. Mandela School of Clinical Medicine,
, University of KwaZulu-Natal, ; Durban, South Africa
[14
]GRID grid.21729.3f, ISNI 0000000419368729, Department of Epidemiology, Mailman School of Public Health, , Columbia University, ; New York, NY USA
[15
]GRID grid.34477.33, ISNI 0000000122986657, Department of Global Health, , University of Washington, ; Seattle, WA USA
[16
]GRID grid.418159.0, ISNI 0000 0004 0491 2699, Max Planck Institute for Infection Biology, ; Berlin, Germany
[17
]GRID grid.7836.a, ISNI 0000 0004 1937 1151, Center for Infectious Disease Epidemiology and Research, School of Public Health and
Family Medicine, , University of Cape Town, ; Cape Town, South Africa
[18
]GRID grid.7836.a, ISNI 0000 0004 1937 1151, University of Cape Town/Groote Schuur Complex of the National Health Laboratory Service
(NHLS), University of Cape Town, ; Cape Town, South Africa
[19
]GRID grid.7836.a, ISNI 0000 0004 1937 1151, Division of Computational Biology, Department of Integrative Biomedical Sciences,
, University of Cape Town, ; Cape Town, South Africa
[20
]GRID grid.16463.36, ISNI 0000 0001 0723 4123, Medical Microbiology Department, , University of KwaZulu-Natal, ; Durban, South Africa
[21
]National Health Laboratory Services (NHLS), Durban, South Africa
[22
]GRID grid.7836.a, ISNI 0000 0004 1937 1151, Wellcome Centre for Infectious Diseases Research in Africa, , University of Cape Town, ; Cape Town, South Africa
[23
]GRID grid.511287.8, Molecular Diagnostics Services, ; Durban, South Africa
[24
]GRID grid.16463.36, ISNI 0000 0001 0723 4123, Department of Neurosurgery, , University of KwaZulu-Natal, ; Durban, South Africa
[25
]South African Population Research Infrastructure Network, Durban, South Africa
[26
]GRID grid.16463.36, ISNI 0000 0001 0723 4123, Department of Paediatrics and Child Health, , University of KwaZulu-Natal, ; Durban, South Africa
[27
]GRID grid.5254.6, ISNI 0000 0001 0674 042X, Department of Immunology and Microbiology, , University of Copenhagen, ; Copenhagen, Denmark
[28
]GRID grid.16463.36, ISNI 0000 0001 0723 4123, Department of Cardiothoracic Surgery, , University of KwaZulu-Natal, ; Durban, South Africa
[29
]GRID grid.415293.8, ISNI 0000 0004 0383 9602, Department of Medicine, , King Edward VIII Hospital and University of KwaZulu Natal, ; Durban, South Africa
[30
]GRID grid.16463.36, ISNI 0000 0001 0723 4123, College of Health Sciences, , University of KwaZulu-Natal, ; Durban, South Africa
[31
]GRID grid.461656.6, ISNI 0000 0004 0489 3491, Ragon Institute of MGH, MIT and Harvard, ; Boston, MA USA
[32
]GRID grid.16463.36, ISNI 0000 0001 0723 4123, HIV Pathogenesis Programme, The Doris Duke Medical Research Institute, , University of KwaZulu-Natal, ; Durban, South Africa
[33
]GRID grid.16463.36, ISNI 0000 0001 0723 4123, Department of Pulmonology and Critical Care, , University of KwaZulu-Natal, ; Durban, South Africa
[34
]GRID grid.16463.36, ISNI 0000 0001 0723 4123, Department of Neurology, , University of KwaZulu-Natal, ; Durban, South Africa
[35
]GRID grid.265892.2, ISNI 0000000106344187, Division of Infectious Diseases, , University of Alabama at Birmingham, ; Birmingham, AL USA
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