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      A molecular phylogenetic reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae ( Pleosporomycetidae, Dothideomycetes) with keys to world species

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          Abstract

          A reappraisal of the phylogenetic integrity of bitunicate ascomycete fungi belonging to or previously affiliated with the Hysteriaceae, Mytilinidiaceae, Gloniaceae and Patellariaceae is presented, based on an analysis of 121 isolates and four nuclear genes, the ribosomal large and small subunits, transcription elongation factor 1 and the second largest RNA polymerase II subunit. A geographically diverse and high density taxon sampling strategy was employed, including multiple isolates/species from the following genera: Anteaglonium (6/4), Encephalographa (1/1), Farlowiella (3/1), Gloniopsis (8/4), Glonium (4/2), Hysterium (12/5), Hysterobrevium (14/3), Hysterographium (2/1), Hysteropatella (2/2), Lophium (4/2), Mytilinidion (13/10), Oedohysterium (5/3), Ostreichnion (2/2), Patellaria (1/1), Psiloglonium (11/3), Quasiconcha (1/1), Rhytidhysteron (8/3), and 24 outgroup taxa. Sequence data indicate that although the Hysteriales are closely related to the Pleosporales, sufficient branch support exists for their separation into separate orders within the Pleosporomycetidae. The Mytilinidiales are more distantly related within the subclass and show a close association with the Gloniaceae. Although there are examples of concordance between morphological and molecular data, these are few. Molecular data instead support the premise of a large number of convergent evolutionary lineages, which do not correspond to previously held assumptions of synapomorphy relating to spore morphology. Thus, within the Hysteriaceae, the genera Gloniopsis, Glonium, Hysterium and Hysterographium are highly polyphyletic. This necessitated the transfer of two species of Hysterium to Oedohysterium gen. nov. ( Od. insidens comb. nov. and Od. sinense comb. nov.), the description of a new species, Hysterium barrianum sp. nov., and the transfer of two species of Gloniopsis to Hysterobrevium gen. nov. ( Hb. smilacis comb. nov. and Hb. constrictum comb. nov.). While Hysterographium, with the type Hg. fraxini, is removed from the Hysteriaceae, some of its species remain within the family, transferred here to Oedohysterium ( Od. pulchrum comb. nov.), Hysterobrevium ( Hb. mori comb. nov.) and Gloniopsis ( Gp. subrugosa comb. nov.); the latter genus, in addition to the type, Gp. praelonga, with two new species, Gp. arciformis sp. nov. and Gp. kenyensis sp. nov. The genus Glonium is now divided into Anteaglonium ( Pleosporales), Glonium ( Gloniaceae), and Psiloglonium ( Hysteriaceae). The hysterothecium has evolved convergently no less than five times within the Pleosporomycetidae (e.g., Anteaglonium, Farlowiella, Glonium, Hysterographium and the Hysteriaceae). Similarly, thin-walled mytilinidioid (e.g., Ostreichnion) and patellarioid (e.g., Rhytidhysteron) genera, previously in the Mytilinidiaceae and Patellariaceae, respectively, transferred here to the Hysteriaceae, have also evolved at least twice within the subclass. As such, character states traditionally considered to represent synapomorphies among these fungi, whether they relate to spore septation or the ascomata, in fact, represent symplesiomorphies, and most likely have arisen multiple times through convergent evolutionary processes in response to common selective pressures.

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          Phylogenetic species recognition and species concepts in fungi.

          The operational species concept, i.e., the one used to recognize species, is contrasted to the theoretical species concept. A phylogenetic approach to recognize fungal species based on concordance of multiple gene genealogies is compared to those based on morphology and reproductive behavior. Examples where Phylogenetic Species Recognition has been applied to fungi are reviewed and concerns regarding Phylogenetic Species Recognition are discussed.
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            Multiple alignment of DNA sequences with MAFFT.

            Multiple alignment of DNA sequences is an important step in various molecular biological analyses. As a large amount of sequence data is becoming available through genome and other large-scale sequencing projects, scalability, as well as accuracy, is currently required for a multiple sequence alignment (MSA) program. In this chapter, we outline the algorithms of an MSA program MAFFT and provide practical advice, focusing on several typical situations a biologist sometimes faces. For genome alignment, which is beyond the scope of MAFFT, we introduce two tools: TBA and MAUVE.
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              Bioinformatics

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                Author and article information

                Journal
                Stud Mycol
                simycol
                Studies in Mycology
                CBS Fungal Biodiversity Centre
                0166-0616
                1872-9797
                2009
                : 64
                : A phylogenetic re-evaluation of Dothideomycetes
                : 49-83-S3
                Affiliations
                [1 ] Department of Biological Sciences, Kean University, 1000 Morris Ave., Union, New Jersey 07083, U.S.A.
                [2 ] National Museum of Kenya, Botany Department, P.O. Box 40658, 00100, Nairobi, Kenya
                [3 ] Illinois Natural History Survey, University of Illinois Urbana-Champaign, 1816 South Oak Street, Champaign, IL 6182, U.S.A.
                [4 ] The Field Museum, 1400 S. Lake Shore Dr, Chicago, IL 60605, U.S.A.
                [5 ] Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002, South Africa
                [6 ] Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 93133, U.S.A.
                [7 ] National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health, GenBank, 45 Center Drive, MSC 6510, Building 45, Room 6an.18, Bethesda, MD, 20892, U.S.A.
                Author notes
                [* ] Correspondence: E.W.A. Boehm, eboehm@ 123456kean.edu
                Article
                0049
                10.3114/sim.2009.64.03
                2816966
                20169023
                85db485c-3be0-428c-aa41-65f6e0443162
                Copyright © Copyright 2009 CBS-KNAW Fungal Biodiversity Centre

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                Plant science & Botany
                speciation,fungi,patellariales,hysteriales,mytilinidiales,evolution,taxonomy,phylogeny
                Plant science & Botany
                speciation, fungi, patellariales, hysteriales, mytilinidiales, evolution, taxonomy, phylogeny

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