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      Standardization in Quantitative Imaging: A Multicenter Comparison of Radiomic Features from Different Software Packages on Digital Reference Objects and Patient Data Sets

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          Abstract

          Radiomic features are being increasingly studied for clinical applications. We aimed to assess the agreement among radiomic features when computed by several groups by using different software packages under very tightly controlled conditions, which included standardized feature definitions and common image data sets. Ten sites (9 from the NCI's Quantitative Imaging Network] positron emission tomography–computed tomography working group plus one site from outside that group) participated in this project. Nine common quantitative imaging features were selected for comparison including features that describe morphology, intensity, shape, and texture. The common image data sets were: three 3D digital reference objects (DROs) and 10 patient image scans from the Lung Image Database Consortium data set using a specific lesion in each scan. Each object (DRO or lesion) was accompanied by an already-defined volume of interest, from which the features were calculated. Feature values for each object (DRO or lesion) were reported. The coefficient of variation (CV), expressed as a percentage, was calculated across software packages for each feature on each object. Thirteen sets of results were obtained for the DROs and patient data sets. Five of the 9 features showed excellent agreement with CV < 1%; 1 feature had moderate agreement (CV < 10%), and 3 features had larger variations (CV ≥ 10%) even after attempts at harmonization of feature calculations. This work highlights the value of feature definition standardization as well as the need to further clarify definitions for some features.

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          IBEX: an open infrastructure software platform to facilitate collaborative work in radiomics.

          Radiomics, which is the high-throughput extraction and analysis of quantitative image features, has been shown to have considerable potential to quantify the tumor phenotype. However, at present, a lack of software infrastructure has impeded the development of radiomics and its applications. Therefore, the authors developed the imaging biomarker explorer (IBEX), an open infrastructure software platform that flexibly supports common radiomics workflow tasks such as multimodality image data import and review, development of feature extraction algorithms, model validation, and consistent data sharing among multiple institutions.
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            Quantitative Imaging of Cancer in the Postgenomic Era: Radio(geno)mics, Deep Learning, and Habitats

            Although cancer often is referred to as “a disease of the genes,” it is indisputable that the (epi)genetic properties of individual cancer cells are highly variable, even within the same tumor. Hence, preexisting resistant clones will emerge and proliferate after therapeutic selection that targets sensitive clones. Herein, the authors propose that quantitative image analytics, known as “radiomics,” can be used to quantify and characterize this heterogeneity. Virtually every patient with cancer is imaged radiologically. Radiomics is predicated on the beliefs that these images reflect underlying pathophysiologies, and that they can be converted into mineable data for improved diagnosis, prognosis, prediction, and therapy monitoring. In the last decade, the radiomics of cancer has grown from a few laboratories to a worldwide enterprise. During this growth, radiomics has established a convention, wherein a large set of annotated image features (1–2000 features) are extracted from segmented regions of interest and used to build classifier models to separate individual patients into their appropriate class (eg, indolent vs aggressive disease). An extension of this conventional radiomics is the application of “deep learning,” wherein convolutional neural networks can be used to detect the most informative regions and features without human intervention. A further extension of radiomics involves automatically segmenting informative subregions (“habitats”) within tumors, which can be linked to underlying tumor pathophysiology. The goal of the radiomics enterprise is to provide informed decision support for the practice of precision oncology.
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              Radiomics of Lung Nodules: A Multi-Institutional Study of Robustness and Agreement of Quantitative Imaging Features

              Radiomics is to provide quantitative descriptors of normal and abnormal tissues during classification and prediction tasks in radiology and oncology. Quantitative Imaging Network members are developing radiomic “feature” sets to characterize tumors, in general, the size, shape, texture, intensity, margin, and other aspects of the imaging features of nodules and lesions. Efforts are ongoing for developing an ontology to describe radiomic features for lung nodules, with the main classes consisting of size, local and global shape descriptors, margin, intensity, and texture-based features, which are based on wavelets, Laplacian of Gaussians, Law’s features, gray-level co-occurrence matrices, and run-length features. The purpose of this study is to investigate the sensitivity of quantitative descriptors of pulmonary nodules to segmentations and to illustrate comparisons across different feature types and features computed by different implementations of feature extraction algorithms. We calculated the concordance correlation coefficients of the features as a measure of their stability with the underlying segmentation; 68% of the 830 features in this study had a concordance CC of ≥0.75. Pairwise correlation coefficients between pairs of features were used to uncover associations between features, particularly as measured by different participants. A graphical model approach was used to enumerate the number of uncorrelated feature groups at given thresholds of correlation. At a threshold of 0.75 and 0.95, there were 75 and 246 subgroups, respectively, providing a measure for the features’ redundancy.
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                Author and article information

                Journal
                Tomography
                Tomography
                TOMOG
                Tomography
                Grapho Publications, LLC (Ann Abor, Michigan )
                2379-1381
                2379-139X
                June 2020
                : 6
                : 2
                : 118-128
                Affiliations
                [1 ]David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA;
                [2 ]Stanford University School of Medicine, Stanford, CA;
                [3 ]The University of Western Ontario, Canada;
                [4 ]University of Michigan, Ann Arbor, MI;
                [5 ]University of Washington, Seattle, WA;
                [6 ]University of South Florida, Tampa, FL;
                [7 ]H. Lee Moffitt Cancer Center, Tampa, FL;
                [8 ]UC San Francisco, School of Medicine, San Francisco, CA;
                [9 ]Columbia University Medical Center, New York, NY;
                [10 ]BC Cancer Research Centre, Vancouver, BC, Canada;
                [11 ]Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA;
                [12 ]Massachusetts General Hospital, Boston, MA; and
                [13 ]National Cancer Institute, Bethesda, MD
                [14]
                Author notes
                Corresponding Author: Michael McNitt-Gray, PhD Department of Radiological Sciences, David Geffen School of Medicine at UCLA, 924 Westwood Blvd, Suite 650, Los Angeles, CA 90024; E-mail: mmcnittgray@ 123456mednet.ucla.edu
                Article
                TOMO.2019.00031
                10.18383/j.tom.2019.00031
                7289262
                32548288
                9f1594d3-2a1e-4171-b42e-68907f8ec85f
                © 2020 The Authors. Published by Grapho Publications, LLC

                This is an open access article under the CC BY-NC-ND license ( http://creativecommons.org/licenses/by-nc-nd/4.0/).

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                Research Articles

                radiomics,quantitative imaging,standardization,multi-center,feature definitions

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