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      Rhizoplane and Rhizosphere Fungal Communities of Geographically Isolated Korean Bellflower ( Campanula takesimana Nakai)

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          Abstract

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          The current study reports fungal diversities in the rhizoplane (RP) and rhizosphere (RS) samples of the geographically isolated Korean bellflower ( Campanula takesimana) obtained from its original habitats of the eastern coast of the Korean Peninsula for the first time. The identification of specific taxa in each site may provide a better understanding of the interaction between the soil fungi and Korean bellflower.

          Abstract

          Fungal communities in the rhizoplane (RP) and rhizosphere (RS) of geographically isolated C. takesimana habitats in different environments such as oceanic (Seodo, the Dokdo Islands), coastline (Sadong, Ulleungdo Island), and inland (Taeha, Ulleungdo Island) regions were analyzed by MiSeq sequencing. In total, 1279 operational taxonomic units (OTUs) were obtained and they were further classified into 185 genera belonging to five phyla. The total number of fungal taxa in the RP samples was lower than those in the RS samples in all the sampled locations, providing an indication of the existence of a certain level of the selective pressures from the host plant. The richness of the RP in the Dokdo Islands was higher than that of Ulleungdo Island, but the richness of the RS in the Dokdo Islands was lower than that of Ulleungdo Island. These results suggest evidence for strong effects of a harsh geo-climate on the RP and RS fungal diversities in the Dokdo Islands. Additionally, a total of 82 fungal genera were identified in all three RP samples and 63 genera (77%) were uniquely found in each of the geographical regions and 43 genera (52.4%) showed high dependency on the C. takesimana vegetation. It was found that the genus Mortierella was the most dominant taxon in all the samples. The geo-ecological isolation of the Korean bellflower may have caused unique formation of the RP and RS fungal communities in the natural habitats.

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          Most cited references67

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          QIIME allows analysis of high-throughput community sequencing data.

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            Search and clustering orders of magnitude faster than BLAST.

            Biological sequence data is accumulating rapidly, motivating the development of improved high-throughput methods for sequence classification. UBLAST and USEARCH are new algorithms enabling sensitive local and global search of large sequence databases at exceptionally high speeds. They are often orders of magnitude faster than BLAST in practical applications, though sensitivity to distant protein relationships is lower. UCLUST is a new clustering method that exploits USEARCH to assign sequences to clusters. UCLUST offers several advantages over the widely used program CD-HIT, including higher speed, lower memory use, improved sensitivity, clustering at lower identities and classification of much larger datasets. Binaries are available at no charge for non-commercial use at http://www.drive5.com/usearch.
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              Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.

              mothur aims to be a comprehensive software package that allows users to use a single piece of software to analyze community sequence data. It builds upon previous tools to provide a flexible and powerful software package for analyzing sequencing data. As a case study, we used mothur to trim, screen, and align sequences; calculate distances; assign sequences to operational taxonomic units; and describe the alpha and beta diversity of eight marine samples previously characterized by pyrosequencing of 16S rRNA gene fragments. This analysis of more than 222,000 sequences was completed in less than 2 h with a laptop computer.
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                Author and article information

                Contributors
                Role: Academic Editor
                Role: Academic Editor
                Journal
                Biology (Basel)
                Biology (Basel)
                biology
                Biology
                MDPI
                2079-7737
                10 February 2021
                February 2021
                : 10
                : 2
                : 138
                Affiliations
                [1 ]Quality Research Institute, Waterworks Headquarters Incheon Metropolitan City, Incheon 22101, Korea; eveningwater@ 123456hanmail.net
                [2 ]Microorganism Resources Division, National Institute of Biological Resources, Incheon 22689, Korea; htes0311@ 123456korea.kr
                [3 ]College of Pharmacy, Chonnam National University, Gwangju 61186, Korea; yccho@ 123456chonnam.ac.kr
                [4 ]Biological and Genetic Resources Assessment Division, National Institute of Biological Resources, Incheon 22689, Korea; dpt510@ 123456korea.kr
                [5 ]Department of Hydrogen and Renewable Energy, Kyungpook National University, Daegu 41566, Korea
                Author notes
                [* ]Correspondence: jwhong@ 123456knu.ac.kr (J.W.H.); rocer2404@ 123456korea.kr (Y.-H.Y.); Tel.: +82-53-950-4578 (J.W.H.); Fax: +82-53-950-3889 (J.W.H.)
                Author information
                https://orcid.org/0000-0003-3363-3325
                https://orcid.org/0000-0002-1460-5217
                Article
                biology-10-00138
                10.3390/biology10020138
                7916508
                33578742
                a15ac1a1-ee2c-4818-9de2-24f610b00c20
                © 2021 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 24 December 2020
                : 08 February 2021
                Categories
                Article

                korean bellflower,campanula takesimana,geographical segregation,mortierella,rhizoplane,rhizosphere

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