3
views
0
recommends
+1 Recommend
1 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Emendation of the Coccoid Cyanobacterial Genus Gloeocapsopsis and Description of the New Species Gloeocapsopsis diffluens sp. nov. and Gloeocapsopsis dulcis sp. nov. Isolated From the Coastal Range of the Atacama Desert (Chile)

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          The taxonomy of coccoid cyanobacteria, such as Chroococcidiopsis, Pleurocapsa, Chroococcus, Gloeothece, Gloeocapsa, Gloeocapsopsis, and the related recent genera Sinocapsa and Aliterella, can easily be intermixed when solely compared on a morphological basis. There is still little support on the taxonomic position of some of the addressed genera, as genetic information is available only for a fraction of species that have been described solely on morphology. Modern polyphasic approaches that combine classic morphological investigations with DNA-based molecular analyses and the evaluation of ecological properties can disentangle these easily confusable unicellular genera. By using such an approach, we present here the formal description of two novel unicellular cyanobacterial species that inhabit the Coastal Range of the Atacama Desert, Gloeocapsopsis dulcis (first reported as Gloeocapsopsis AAB1) and Gloeocapsopsis diffluens. Both species could be clearly separated from previously reported species by 16S rRNA and 16S–23S ITS gene sequencing, the resulting secondary structures, p-distance analyses of the 16S–23S ITS, and morphology. For avoiding further confusions emendation of the genus Gloeocapsopsis as well as epitypification of the type species Gloeocapsopsis crepidinum based on the strain LEGE06123 were conducted.

          Related collections

          Most cited references51

          • Record: found
          • Abstract: found
          • Article: not found

          MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

          The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable cross-platform use on Microsoft Windows and Linux operating systems. Mega X does not require virtualization or emulation software and provides a uniform user experience across platforms. Mega X has additionally been upgraded to use multiple computing cores for many molecular evolutionary analyses. Mega X is available in two interfaces (graphical and command line) and can be downloaded from www.megasoftware.net free of charge.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            MrBayes 3: Bayesian phylogenetic inference under mixed models.

            MrBayes 3 performs Bayesian phylogenetic analysis combining information from different data partitions or subsets evolving under different stochastic evolutionary models. This allows the user to analyze heterogeneous data sets consisting of different data types-e.g. morphological, nucleotide, and protein-and to explore a wide variety of structured models mixing partition-unique and shared parameters. The program employs MPI to parallelize Metropolis coupling on Macintosh or UNIX clusters.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Mfold web server for nucleic acid folding and hybridization prediction.

              M Zuker (2003)
              The abbreviated name, 'mfold web server', describes a number of closely related software applications available on the World Wide Web (WWW) for the prediction of the secondary structure of single stranded nucleic acids. The objective of this web server is to provide easy access to RNA and DNA folding and hybridization software to the scientific community at large. By making use of universally available web GUIs (Graphical User Interfaces), the server circumvents the problem of portability of this software. Detailed output, in the form of structure plots with or without reliability information, single strand frequency plots and 'energy dot plots', are available for the folding of single sequences. A variety of 'bulk' servers give less information, but in a shorter time and for up to hundreds of sequences at once. The portal for the mfold web server is http://www.bioinfo.rpi.edu/applications/mfold. This URL will be referred to as 'MFOLDROOT'.
                Bookmark

                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                08 July 2021
                2021
                : 12
                : 671742
                Affiliations
                [1] 1University of Applied Sciences Kaiserslautern , Pirmasens, Germany
                [2] 2Centro de Astrobiología (CSIC-INTA) , Madrid, Spain
                [3] 3Instituto de Ciencias Biomédicas, Facultad de Ciencias de la Salud, Universidad Autónoma de Chile , Santiago, Chile
                [4] 4Facultad de Ciencias, Universidad de Tarapacá , Arica, Chile
                [5] 5M. G. Kholodny Institute of Botany, National Academy of Sciences of Ukraine , Kyiv, Ukraine
                [6] 6Institute of Botany, University of Innsbruck , Innsbruck, Austria
                [7] 7Technical University of Kaiserslautern , Kaiserslautern, Germany
                Author notes

                Edited by: Mark Alexander Lever, ETH Zürich, Switzerland

                Reviewed by: Stjepko Golubić, Boston University, United States; Diogo Antonio Tschoeke, Federal University of Rio de Janeiro, Brazil

                *Correspondence: Patrick Jung, patrick_jung90@ 123456web.de

                This article was submitted to Extreme Microbiology, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2021.671742
                8295473
                34305839
                a3bde51f-23fc-4909-b8fd-77b8b42cc306
                Copyright © 2021 Jung, Azua-Bustos, Gonzalez-Silva, Mikhailyuk, Zabicki, Holzinger, Lakatos and Büdel.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 11 March 2021
                : 27 May 2021
                Page count
                Figures: 8, Tables: 0, Equations: 0, References: 52, Pages: 16, Words: 8610
                Funding
                Funded by: German Research Foundation 10.13039/501100001659
                Award ID: BU 666/17
                Funded by: European Regional Development Fund 10.13039/501100008530
                Award ID: 84003265
                Funded by: European Research Council 10.13039/501100000781
                Award ID: 818602
                Funded by: Human Frontiers Science Program
                Award ID: RGY0066/2018
                Funded by: Austrian Science Fund 10.13039/501100002428
                Award ID: P34181-B to AH
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                chroococcidiopsis,gloeocapsopsis,atacama desert,chroococcidiopsidales,polyphasic approach

                Comments

                Comment on this article