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      Mouse cytomegalovirus-experienced ILC1s acquire a memory response dependent on the viral glycoprotein m12

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          Abstract

          Innate lymphoid cells (ILCs) are tissue-resident sentinels that are essential for early host protection from pathogens at initial sites of infection. However, whether pathogen-derived antigens directly modulate the responses of tissue-resident ILCs has remained unclear. Here, we found that liver-resident type 1 innate lymphoid cells (ILC1s) expanded locally and persisted after the resolution of infection with mouse cytomegalovirus (MCMV). ILC1s acquired stable transcriptional, epigenetic and phenotypic changes a month after the resolution of MCMV infection, and showed an enhanced protective effector response to secondary challenge with MCMV consistent with a memory lymphocyte response. Memory ILC1 responses were dependent on the MCMV-encoded glycoprotein m12, and were independent of bystander activation by proinflammatory cytokines after heterologous infection. Thus, liver ILC1s acquire adaptive features in an MCMV-specific manner.

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          Most cited references21

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          Candida albicans infection affords protection against reinfection via functional reprogramming of monocytes.

          Immunological memory in vertebrates is often exclusively attributed to T and B cell function. Recently it was proposed that the enhanced and sustained innate immune responses following initial infectious exposure may also afford protection against reinfection. Testing this concept of "trained immunity," we show that mice lacking functional T and B lymphocytes are protected against reinfection with Candida albicans in a monocyte-dependent manner. C. albicans and fungal cell wall β-glucans induced functional reprogramming of monocytes, leading to enhanced cytokine production in vivo and in vitro. The training required the β-glucan receptor dectin-1 and the noncanonical Raf-1 pathway. Monocyte training by β-glucans was associated with stable changes in histone trimethylation at H3K4, which suggests the involvement of epigenetic mechanisms in this phenomenon. The functional reprogramming of monocytes, reminiscent of similar NK cell properties, supports the concept of "trained immunity" and may be employed for the design of improved vaccination strategies. Copyright © 2012 Elsevier Inc. All rights reserved.
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            Interferon and IL-27 antagonize the function of group 2 innate lymphoid cells and type 2 innate immune responses.

            Group 2 innate lymphoid cells (ILC2 cells) are type 2 cytokine-producing cells of the innate immune system with important roles in helminth infection and allergic inflammation. Here we found that tissue-resident ILC2 cells proliferated in situ without migrating during inflammatory responses. Both type I and type II interferons and interleukin 27 (IL-27) suppressed ILC2 function in a manner dependent on the transcription factor STAT1. ILC2-mediated lung inflammation was enhanced in the absence of the interferon-γ (IFN-γ) receptor on ILC2 cells in vivo. IFN-γ effectively suppressed the function of tissue-resident ILC2 cells but not that of inflammatory ILC2 cells, and IL-27 suppressed tissue-resident ILC2 cells but not tissue-resident TH2 cells during lung inflammation induced by Alternaria alternata. Our results demonstrate that suppression mediated by interferon and IL-27 is a negative feedback mechanism for ILC2 function in vivo.
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              Transcriptional insights into the CD8(+) T cell response to infection and memory T cell formation.

              After infection, many factors coordinate the population expansion and differentiation of CD8+ effector and memory T cells. Using data of unparalleled breadth from the Immunological Genome Project, we analyzed the CD8+ T cell transcriptome throughout infection to establish gene-expression signatures and identify putative transcriptional regulators. Notably, we found that the expression of key gene signatures can be used to predict the memory-precursor potential of CD8+ effector cells. Long-lived memory CD8+ cells ultimately expressed a small subset of genes shared by natural killer T and γδ T cells. Although distinct inflammatory milieu and T cell precursor frequencies influenced the differentiation of CD8+ effector and memory populations, core transcriptional signatures were regulated similarly, whether polyclonal or transgenic, and whether responding to bacterial or viral model pathogens. Our results provide insights into the transcriptional regulation that influence memory formation and CD8+ T cell immunity.
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                Author and article information

                Journal
                100941354
                21750
                Nat Immunol
                Nat. Immunol.
                Nature immunology
                1529-2908
                1529-2916
                22 May 2019
                01 July 2019
                August 2019
                01 January 2020
                : 20
                : 8
                : 1004-1011
                Affiliations
                [1 ]Immunology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
                [2 ]Department of Immunobiology, Yale University, New Haven, CT, 06511, USA
                [3 ]Louis V. Gerstner, Jr. Graduate School of Biomedical Sciences, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA
                [4 ]Department of Microbiology, Immunology, and Molecular Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA 900953
                [5 ]Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA
                [6 ]Computational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
                [7 ]Department of Immunology, University of Toronto, Toronto, ON M5S 1A8, Canada
                [8 ]Department of Immunology and Microbial Pathogenesis, Weill Cornell Medical College, New York, NY 10065, USA
                Author notes
                [* ] Corresponding Author Timothy E. O’Sullivan, PhD, David Geffen School of Medicine at UCLA, 615 Charles E. Young Drive South, BSRB 245F, Los Angeles, CA 90095, Phone: 310-825-4454, tosullivan@ 123456mednet.ucla.edu
                [#]

                Present Address: Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94143, USA

                Author Contributions

                O.E.W, and T.E.O. designed the study; O.E.W, N.M.A., A.D.H., L.R., and T.E.O performed the experiments; E.S., C.K., and C.S.L. performed RNA-seq and ATAC-seq bioinformatics analysis; J.R.C. and O.A.A. provided reagents; O.E.W, J.C.S. and T.E.O. wrote the manuscript.

                Article
                NIHMS1529957
                10.1038/s41590-019-0430-1
                6697419
                31263280
                a59ee97d-74fb-49e6-8a47-104dcf452095

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                Immunology
                Immunology

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