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      The 1-aminocyclopropane-1-carboxylic acid deaminase-producing Streptomyces violaceoruber UAE1 can provide protection from sudden decline syndrome on date palm

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          Abstract

          In the United Arab Emirates (UAE), sudden decline syndrome (SDS) is one of the major fungal diseases caused by Fusarium solani affecting date palm plantations. To minimize the impact of the causal agent of SDS on date palm, native actinobacterial strains isolated from rhizosphere soils of healthy date palm plants were characterized according to their antifungal activities against F. solani DSM 106836 ( Fs). Based on their in vitro abilities, two promising biocontrol agents (BCAs), namely Streptomyces tendae UAE1 ( St) and Streptomyces violaceoruber UAE1 ( Sv), were selected for the production of antifungal compounds and cell wall degrading enzymes (CWDEs), albeit their variations in synthesizing 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase (ACCD). Although both isolates showed antagonism when applied 7 days before the pathogen in the greenhouse experiments, the ACCD-producing Sv was relatively superior in its efficacy against SDS over the non-ACCD-producing St. This was evident from the symptoms of SDS in diseased date palm seedlings which were greatly reduced by Sv compared to St. On a scale of 5.0, the estimated disease severity indices in Fs-diseased seedlings were significantly ( P < 0.05) reduced from 4.8 to 1.5 and 0.5 by St and Sv, respectively. Thus, the number of conidia of Fs recovered from plants pre-treated with both BCAs was comparable, but significantly ( P < 0.05) reduced compared to plants without any BCA treatment. In addition, a significant ( P < 0.05) decrease in ACC levels of both the root and shoot tissues was detected in Sv + Fs seedlings to almost similar levels of healthy seedlings. However, in planta ACC levels highly increased in seedlings grown in soils infested with the pathogen alone or amended with St prior to F. solani infestation ( St + Fs). This suggests a major role of ACCD production in relieving the stress of date palm seedlings infected with F. solani, thus supporting the integrated preventive disease management programs against this pathogen. This is the first report of effective rhizosphere actinobacterial BCAs to provide protection against SDS on date palm, and to help increase agricultural productivity in a more sustainable manner in the UAE and the other arid regions.

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          A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

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            MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

            We present the latest version of the Molecular Evolutionary Genetics Analysis (Mega) software, which contains many sophisticated methods and tools for phylogenomics and phylomedicine. In this major upgrade, Mega has been optimized for use on 64-bit computing systems for analyzing larger datasets. Researchers can now explore and analyze tens of thousands of sequences in Mega The new version also provides an advanced wizard for building timetrees and includes a new functionality to automatically predict gene duplication events in gene family trees. The 64-bit Mega is made available in two interfaces: graphical and command line. The graphical user interface (GUI) is a native Microsoft Windows application that can also be used on Mac OS X. The command line Mega is available as native applications for Windows, Linux, and Mac OS X. They are intended for use in high-throughput and scripted analysis. Both versions are available from www.megasoftware.net free of charge.
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              The neighbor-joining method: a new method for reconstructing phylogenetic trees.

              N Saitou, M Nei (1987)
              A new method called the neighbor-joining method is proposed for reconstructing phylogenetic trees from evolutionary distance data. The principle of this method is to find pairs of operational taxonomic units (OTUs [= neighbors]) that minimize the total branch length at each stage of clustering of OTUs starting with a starlike tree. The branch lengths as well as the topology of a parsimonious tree can quickly be obtained by using this method. Using computer simulation, we studied the efficiency of this method in obtaining the correct unrooted tree in comparison with that of five other tree-making methods: the unweighted pair group method of analysis, Farris's method, Sattath and Tversky's method, Li's method, and Tateno et al.'s modified Farris method. The new, neighbor-joining method and Sattath and Tversky's method are shown to be generally better than the other methods.
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                Author and article information

                Contributors
                Journal
                Front Plant Sci
                Front Plant Sci
                Front. Plant Sci.
                Frontiers in Plant Science
                Frontiers Media S.A.
                1664-462X
                27 July 2022
                2022
                : 13
                : 904166
                Affiliations
                [1] 1Department of Biology, College of Science, United Arab Emirates University , Al-Ain, United Arab Emirates
                [2] 2Research Station Section, Abu Dhabi Agriculture and Food Safety Authority , Abu Dhabi, United Arab Emirates
                [3] 3Khalifa Center for Genetic Engineering and Biotechnology, United Arab Emirates University , Al-Ain, United Arab Emirates
                [4] 4Harry Butler Institute, Murdoch University , Murdoch, WA, Australia
                Author notes

                Edited by: Eligio Malusà, Research Institute of Horticulture, Poland

                Reviewed by: Manoj Kumar Solanki, University of Silesia in Katowice, Poland; Andrea Manfredini, Council for Agricultural Research and Economics (CREA), Italy

                *Correspondence: Synan F. AbuQamar, sabuqamar@ 123456uaeu.ac.ae
                Khaled A. El-Tarabily, ktarabily@ 123456uaeu.ac.ae

                These authors have contributed equally to this work

                This article was submitted to Plant Pathogen Interactions, a section of the journal Frontiers in Plant Science

                Article
                10.3389/fpls.2022.904166
                9373858
                b381747e-ca57-48f6-9082-8c124c5a0388
                Copyright © 2022 Alwahshi, Purayil, Saeed, Abufarajallah, Aldhaheri, AbuQamar and El-Tarabily.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 25 March 2022
                : 27 June 2022
                Page count
                Figures: 5, Tables: 2, Equations: 0, References: 105, Pages: 19, Words: 14354
                Categories
                Plant Science
                Original Research

                Plant science & Botany
                actinobacteria,biocontrol,date palm,fusarium solani,rhizosphere,plant–microbe interaction,sudden decline syndrome

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