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      Use of triple correlations for the sign determinations of expansion coefficients of symmetric approximations to the diffraction volumes of regular viruses

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      Structural Dynamics
      American Crystallographic Association

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          Abstract

          An X-ray free electron laser is a new source of x-rays some 10 × 10 9 times brighter than any previous X-ray source, giving rise to the possibility of structure determination of individual biological particles without crystallization. Some of the earliest samples used in the X-ray free electron laser are viruses because they are about the largest of reproducible bioparticles. We show how common virus near-symmetries can be exploited to find a first approximation to their structures to give a starting point for a perturbation approach to determine their structures.

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          Most cited references33

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          Why do ultrasoft repulsive particles cluster and crystallize? Analytical results from density functional theory

          We demonstrate the accuracy of the hypernetted chain closure and of the mean-field approximation for the calculation of the fluid-state properties of systems interacting by means of bounded and positive-definite pair potentials with oscillating Fourier transforms. Subsequently, we prove the validity of a bilinear, random-phase density functional for arbitrary inhomogeneous phases of the same systems. On the basis of this functional, we calculate analytically the freezing parameters of the latter. We demonstrate explicitly that the stable crystals feature a lattice constant that is independent of density and whose value is dictated by the position of the negative minimum of the Fourier transform of the pair potential. This property is equivalent with the existence of clusters, whose population scales proportionally to the density. We establish that regardless of the form of the interaction potential and of the location on the freezing line, all cluster crystals have a universal Lindemann ratio L = 0.189 at freezing. We further make an explicit link between the aforementioned density functional and the harmonic theory of crystals. This allows us to establish an equivalence between the emergence of clusters and the existence of negative Fourier components of the interaction potential. Finally, we make a connection between the class of models at hand and the system of infinite-dimensional hard spheres, when the limits of interaction steepness and space dimension are both taken to infinity in a particularly described fashion.
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            A relativistic jetted outburst from a massive black hole fed by a tidally disrupted star

            While gas accretion onto some massive black holes (MBHs) at the centers of galaxies actively powers luminous emission, the vast majority of MBHs are considered dormant. Occasionally, a star passing too near a MBH is torn apart by gravitational forces, leading to a bright panchromatic tidal disruption flare (TDF). While the high-energy transient Swift J164449.3+573451 ("Sw 1644+57") initially displayed none of the theoretically anticipated (nor previously observed) TDF characteristics, we show that the observations (Levan et al. 2011) suggest a sudden accretion event onto a central MBH of mass ~10^6-10^7 solar masses. We find evidence for a mildly relativistic outflow, jet collimation, and a spectrum characterized by synchrotron and inverse Compton processes; this leads to a natural analogy of Sw 1644+57 with a smaller-scale blazar. The phenomenologically novel Sw 1644+57 thus connects the study of TDFs and active galaxies, opening a new vista on disk-jet interactions in BHs and magnetic field generation and transport in accretion systems.
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              Physical Principles in the Construction of Regular Viruses

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                Author and article information

                Journal
                Struct Dyn
                Struct Dyn
                SDTYAE
                Structural Dynamics
                American Crystallographic Association
                2329-7778
                18 June 2015
                July 2015
                18 June 2015
                : 2
                : 4
                : 041716
                Affiliations
                Department of Physics and Laboratory for Surface Studies, University of Wisconsin Milwaukee , P.O. Box 413, Milwaukee, Wisconsin 53201, USA
                Author notes
                [a)]

                Author to whom correspondence should be addressed. Electronic mail: dksaldin@ 123456uwm.edu

                Article
                1.4922476 016591SDY SD-BIOXFEL15-00027R1
                10.1063/1.4922476
                4711643
                baf477d1-e8b0-4189-a4f6-76a061f15b87
                © 2015 Author(s).

                2329-7778/2015/2(4)/041716/8

                All article content, except where otherwise noted, is licensed under a Creative Commons Attribution 3.0 Unported License.

                History
                : 27 February 2015
                : 02 June 2015
                Page count
                Pages: 8
                Categories
                SPECIAL TOPIC: BIOLOGY WITH X-RAY LASERS 2
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