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      Improving gait classification in horses by using inertial measurement unit (IMU) generated data and machine learning

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          Abstract

          For centuries humans have been fascinated by the natural beauty of horses in motion and their different gaits. Gait classification (GC) is commonly performed through visual assessment and reliable, automated methods for real-time objective GC in horses are warranted. In this study, we used a full body network of wireless, high sampling-rate sensors combined with machine learning to fully automatically classify gait. Using data from 120 horses of four different domestic breeds, equipped with seven motion sensors, we included 7576 strides from eight different gaits. GC was trained using several machine-learning approaches, both from feature-extracted data and from raw sensor data. Our best GC model achieved 97% accuracy. Our technique facilitated accurate, GC that enables in-depth biomechanical studies and allows for highly accurate phenotyping of gait for genetic research and breeding. Our approach lends itself for potential use in other quadrupedal species without the need for developing gait/animal specific algorithms.

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          Most cited references22

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          Symmetrical gaits of horses.

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            Biological pattern generation: the cellular and computational logic of networks in motion.

            In 1900, Ramón y Cajal advanced the neuron doctrine, defining the neuron as the fundamental signaling unit of the nervous system. Over a century later, neurobiologists address the circuit doctrine: the logic of the core units of neuronal circuitry that control animal behavior. These are circuits that can be called into action for perceptual, conceptual, and motor tasks, and we now need to understand whether there are coherent and overriding principles that govern the design and function of these modules. The discovery of central motor programs has provided crucial insight into the logic of one prototypic set of neural circuits: those that generate motor patterns. In this review, I discuss the mode of operation of these pattern generator networks and consider the neural mechanisms through which they are selected and activated. In addition, I will outline the utility of computational models in analysis of the dynamic actions of these motor networks.
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              Mutations in DMRT3 affect locomotion in horses and spinal circuit function in mice.

              Locomotion in mammals relies on a central pattern-generating circuitry of spinal interneurons established during development that coordinates limb movement. These networks produce left-right alternation of limbs as well as coordinated activation of flexor and extensor muscles. Here we show that a premature stop codon in the DMRT3 gene has a major effect on the pattern of locomotion in horses. The mutation is permissive for the ability to perform alternate gaits and has a favourable effect on harness racing performance. Examination of wild-type and Dmrt3-null mice demonstrates that Dmrt3 is expressed in the dI6 subdivision of spinal cord neurons, takes part in neuronal specification within this subdivision, and is critical for the normal development of a coordinated locomotor network controlling limb movements. Our discovery positions Dmrt3 in a pivotal role for configuring the spinal circuits controlling stride in vertebrates. The DMRT3 mutation has had a major effect on the diversification of the domestic horse, as the altered gait characteristics of a number of breeds apparently require this mutation.
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                Author and article information

                Contributors
                f.m.serrabraganca@uu.nl
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                20 October 2020
                20 October 2020
                2020
                : 10
                : 17785
                Affiliations
                [1 ]GRID grid.5477.1, ISNI 0000000120346234, Department of Clinical Sciences, Faculty of Veterinary Medicine, , Utrecht University, ; 3584CM Utrecht, The Netherlands
                [2 ]GRID grid.5037.1, ISNI 0000000121581746, Division of Robotics, Perception and Learning, , KTH Royal Institute of Technology, ; Stockholm, Sweden
                [3 ]GRID grid.6341.0, ISNI 0000 0000 8578 2742, Department of Anatomy, Physiology and Biochemistry, , Swedish University of Agricultural Sciences, ; Uppsala, Sweden
                [4 ]GRID grid.432856.e, ISNI 0000 0001 1014 8912, Agricultural University of Iceland, ; Hvanneyri, Borgarnes Iceland
                [5 ]GRID grid.440543.2, ISNI 0000 0004 0470 2755, Department of Equine Science, , Hólar University College, ; Hólar, Iceland
                [6 ]GRID grid.5342.0, ISNI 0000 0001 2069 7798, Department of Surgery and Anaesthesiology of Domestic Animals, Faculty of Veterinary Medicine, , Ghent University, ; 9820 Merelbeke, Belgium
                [7 ]GRID grid.6341.0, ISNI 0000 0000 8578 2742, Department of Animal Breeding and Genetics, , Swedish University of Agricultural Sciences, ; 75007 Uppsala, Sweden
                [8 ]GRID grid.5596.f, ISNI 0000 0001 0668 7884, Livestock Genetics, Department of Biosystems, , KU Leuven, ; 3001 Leuven, Belgium
                [9 ]Genética Animal de Colombia Ltda, Bogotá, Colombia
                [10 ]GRID grid.7400.3, ISNI 0000 0004 1937 0650, Equine Department, Vetsuisse Faculty, , University of Zurich, ; Winterthurerstrasse 260, 8057 Zurich, Switzerland
                [11 ]Inertia Technology B.V., Enschede, The Netherlands
                Article
                73215
                10.1038/s41598-020-73215-9
                7576586
                33082367
                bc0ed1cd-452b-4e73-99dd-77bf5dd8ec89
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 6 May 2020
                : 14 September 2020
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/100013297, Eurostars;
                Award ID: 12304
                Funded by: FundRef http://dx.doi.org/10.13039/501100001862, Svenska Forskningsrådet Formas;
                Funded by: The Conservation Fund of Pálmi Jonsson
                Categories
                Article
                Custom metadata
                © The Author(s) 2020

                Uncategorized
                animal physiology,biomechanics
                Uncategorized
                animal physiology, biomechanics

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