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      The tumor suppressor kinase DAPK3 drives tumor-intrinsic immunity through the STING–IFN-β pathway

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          Abstract

          Evasion of host immunity is a hallmark of cancer, however mechanisms linking oncogenic mutations and immune escape are incompletely understood. Through loss-of-function screening of 1,001 tumor suppressor genes, we identified DAPK3 as a previously unrecognized driver of anti-tumor immunity through the STING pathway of cytosolic DNA sensing. Loss of DAPK3 expression or kinase activity impaired STING activation and interferon-β (IFN-β)-stimulated gene induction. DAPK3 deficiency in IFN-β-producing tumors drove rapid growth and reduced infiltration of CD103 +CD8α +DCs and cytotoxic lymphocytes, attenuating response to cancer chemo-immunotherapy. Mechanistically, DAPK3 coordinated post-translational modifications of STING. In unstimulated cells, DAPK3 inhibited STING K48-linked poly-ubiquitination and proteasome-mediated degradation. After cGAMP stimulation, DAPK3 was required for STING K63-linked poly-ubiquitination and STING-TBK1 interaction. Comprehensive phospho-proteomics uncovered a DAPK3-specific phosphosite on the E3 ligase LMO7, critical for LMO7-STING interaction and STING K63-linked poly-ubiquitination. Thus, DAPK3 is an essential kinase for STING activation that drives tumor-intrinsic innate immunity and tumor immune surveillance.

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          Most cited references60

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          Hallmarks of Cancer: The Next Generation

          The hallmarks of cancer comprise six biological capabilities acquired during the multistep development of human tumors. The hallmarks constitute an organizing principle for rationalizing the complexities of neoplastic disease. They include sustaining proliferative signaling, evading growth suppressors, resisting cell death, enabling replicative immortality, inducing angiogenesis, and activating invasion and metastasis. Underlying these hallmarks are genome instability, which generates the genetic diversity that expedites their acquisition, and inflammation, which fosters multiple hallmark functions. Conceptual progress in the last decade has added two emerging hallmarks of potential generality to this list-reprogramming of energy metabolism and evading immune destruction. In addition to cancer cells, tumors exhibit another dimension of complexity: they contain a repertoire of recruited, ostensibly normal cells that contribute to the acquisition of hallmark traits by creating the "tumor microenvironment." Recognition of the widespread applicability of these concepts will increasingly affect the development of new means to treat human cancer. Copyright © 2011 Elsevier Inc. All rights reserved.
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            The cBioPortal for Cancer Genomics (http://cbioportal.org) provides a Web resource for exploring, visualizing, and analyzing multidimensional cancer genomics data. The portal reduces molecular profiling data from cancer tissues and cell lines into readily understandable genetic, epigenetic, gene expression, and proteomic events. The query interface combined with customized data storage enables researchers to interactively explore genetic alterations across samples, genes, and pathways and, when available in the underlying data, to link these to clinical outcomes. The portal provides graphical summaries of gene-level data from multiple platforms, network visualization and analysis, survival analysis, patient-centric queries, and software programmatic access. The intuitive Web interface of the portal makes complex cancer genomics profiles accessible to researchers and clinicians without requiring bioinformatics expertise, thus facilitating biological discoveries. Here, we provide a practical guide to the analysis and visualization features of the cBioPortal for Cancer Genomics.
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                Author and article information

                Journal
                100941354
                21750
                Nat Immunol
                Nat Immunol
                Nature immunology
                1529-2908
                1529-2916
                16 July 2021
                25 March 2021
                April 2021
                25 September 2021
                : 22
                : 4
                : 485-496
                Affiliations
                [1 ]La Jolla Institute for Immunology, La Jolla, CA 92037
                [2 ]Department of Pharmacology, University of California, San Diego, CA 92093
                [3 ]Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, CA 92093
                [4 ]Max Planck Institute of Biochemistry, Martinsried, Germany 82152
                [5 ]Department of Medicine, University of California, San Diego, CA 92093
                [6 ]These authors contributed equally to this work
                [7 ]Present address: Department of Microbial Infection and Immunity, College of Medicine, The Ohio State University, Columbus, OH 43210
                [8 ]Present address: Evotec München GmbH, Martinsried, Germany 82152
                Author notes

                Author Contributions

                M.T. designed, optimized, and performed in vitro and in vivo experiments, and the siRNA screen in THP1-Blue ISG. C.J.L. optimized and performed the siRNA screen in HUVEC and generated L929 reporter cells. A.C. optimized and performed phospho-proteomics in THP1-Blue ISG under the supervision of D.J.G. M.S. optimized and performed mass spectrometry analysis in HEK293T and L929 lysates and supported phospho-proteomics under the supervision of M.M. F.A. provided support for bioinformatics analyses. M.J. provided support for mass spectrometry studies. S.S. provided overall direction and supervision. M.T. and S.S. wrote the manuscript with input from co-authors.

                [* ]Correspondence: soniasharma@ 123456lji.org
                Article
                NIHMS1671262
                10.1038/s41590-021-00896-3
                8300883
                33767426
                c6d6fc2c-1149-4e9f-9034-47cf43e9e0cb

                Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: http://www.nature.com/authors/editorial_policies/license.html#terms

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                Immunology
                Immunology

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