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      Spatial Population Genetics: It's About Time

      1 , 2 , 3
      Annual Review of Ecology, Evolution, and Systematics
      Annual Reviews

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          Abstract

          Many important questions about the history and dynamics of organisms have a geographical component: How many are there, and where do they live? How do they move and interbreed across the landscape? How were they moving a thousand years ago, and where were the ancestors of a particular individual alive today? Answers to these questions can have profound consequences for our understanding of history, ecology, and the evolutionary process. In this review, we discuss how geographic aspects of the distribution, movement, and reproduction of organisms are reflected in their pedigree across space and time. Because the structure of the pedigree is what determines patterns of relatedness in modern genetic variation, our aim is to thus provide intuition for how these processes leave an imprint in genetic data. We also highlight some current methods and gaps in the statistical toolbox of spatial population genetics.

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          Most cited references72

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          Ecological and Evolutionary Responses to Recent Climate Change

          Ecological changes in the phenology and distribution of plants and animals are occurring in all well-studied marine, freshwater, and terrestrial groups. These observed changes are heavily biased in the directions predicted from global warming and have been linked to local or regional climate change through correlations between climate and biological variation, field and laboratory experiments, and physiological research. Range-restricted species, particularly polar and mountaintop species, show severe range contractions and have been the first groups in which entire species have gone extinct due to recent climate change. Tropical coral reefs and amphibians have been most negatively affected. Predator-prey and plant-insect interactions have been disrupted when interacting species have responded differently to warming. Evolutionary adaptations to warmer conditions have occurred in the interiors of species' ranges, and resource use and dispersal have evolved rapidly at expanding range margins. Observed genetic shifts modulate local effects of climate change, but there is little evidence that they will mitigate negative effects at the species level.
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            THE WAVE OF ADVANCE OF ADVANTAGEOUS GENES

            R Fisher (1937)
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              Ancient human genomes suggest three ancestral populations for present-day Europeans

              We sequenced genomes from a $\sim$7,000 year old early farmer from Stuttgart in Germany, an $\sim$8,000 year old hunter-gatherer from Luxembourg, and seven $\sim$8,000 year old hunter-gatherers from southern Sweden. We analyzed these data together with other ancient genomes and 2,345 contemporary humans to show that the great majority of present-day Europeans derive from at least three highly differentiated populations: West European Hunter-Gatherers (WHG), who contributed ancestry to all Europeans but not to Near Easterners; Ancient North Eurasians (ANE), who were most closely related to Upper Paleolithic Siberians and contributed to both Europeans and Near Easterners; and Early European Farmers (EEF), who were mainly of Near Eastern origin but also harbored WHG-related ancestry. We model these populations' deep relationships and show that EEF had $\sim$44% ancestry from a "Basal Eurasian" lineage that split prior to the diversification of all other non-African lineages.
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                Author and article information

                Journal
                Annual Review of Ecology, Evolution, and Systematics
                Annu. Rev. Ecol. Evol. Syst.
                Annual Reviews
                1543-592X
                1545-2069
                November 02 2019
                November 02 2019
                : 50
                : 1
                : 427-449
                Affiliations
                [1 ]Ecology, Evolutionary Biology, and Behavior Group, Department of Integrative Biology, Michigan State University, East Lansing, Michigan 48824, USA;
                [2 ]Institute of Ecology and Evolution, Department of Biology, University of Oregon, Eugene, Oregon 97403, USA
                [3 ]Department of Mathematics, University of Oregon, Eugene, Oregon 97403, USA
                Article
                10.1146/annurev-ecolsys-110316-022659
                cbf8d087-80ae-4df7-8c55-9b120b959007
                © 2019
                History

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