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      Mutant ASXL1 induces age-related expansion of phenotypic hematopoietic stem cells through activation of Akt/mTOR pathway

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          Abstract

          Somatic mutations of ASXL1 are frequently detected in age-related clonal hematopoiesis (CH). However, how ASXL1 mutations drive CH remains elusive. Using knockin (KI) mice expressing a C-terminally truncated form of ASXL1-mutant (ASXL1-MT), we examined the influence of ASXL1-MT on physiological aging in hematopoietic stem cells (HSCs). HSCs expressing ASXL1-MT display competitive disadvantage after transplantation. Nevertheless, in genetic mosaic mouse model, they acquire clonal advantage during aging, recapitulating CH in humans. Mechanistically, ASXL1-MT cooperates with BAP1 to deubiquitinate and activate AKT. Overactive Akt/mTOR signaling induced by ASXL1-MT results in aberrant proliferation and dysfunction of HSCs associated with age-related accumulation of DNA damage. Treatment with an mTOR inhibitor rapamycin ameliorates aberrant expansion of the HSC compartment as well as dysregulated hematopoiesis in aged ASXL1-MT KI mice. Our findings suggest that ASXL1-MT provokes dysfunction of HSCs, whereas it confers clonal advantage on HSCs over time, leading to the development of CH.

          Abstract

          ASXL1 mutations are frequently found in age-related clonal haemaotopoiesis (CH), but how they drive CH is unclear. Here the authors show that expression of C-terminal truncated ASXL1 in haematopoietic stem cells (HSCs) leads to Akt de-ubiquitination, activated Akt/mTOR signaling, and aberrant HSC proliferation.

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          Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness

          Signaling through the Ror2 receptor tyrosine kinase promotes invadopodia formation for tumor invasion. Here, we identify intraflagellar transport 20 (IFT20) as a new target of this signaling in tumors that lack primary cilia, and find that IFT20 mediates the ability of Ror2 signaling to induce the invasiveness of these tumors. We also find that IFT20 regulates the nucleation of Golgi-derived microtubules by affecting the GM130-AKAP450 complex, which promotes Golgi ribbon formation in achieving polarized secretion for cell migration and invasion. Furthermore, IFT20 promotes the efficiency of transport through the Golgi complex. These findings shed new insights into how Ror2 signaling promotes tumor invasiveness, and also advance the understanding of how Golgi structure and transport can be regulated.
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            Transcript assembly and abundance estimation from RNA-Seq reveals thousands of new transcripts and switching among isoforms

            High-throughput mRNA sequencing (RNA-Seq) holds the promise of simultaneous transcript discovery and abundance estimation 1-3 . We introduce an algorithm for transcript assembly coupled with a statistical model for RNA-Seq experiments that produces estimates of abundances. Our algorithms are implemented in an open source software program called Cufflinks. To test Cufflinks, we sequenced and analyzed more than 430 million paired 75bp RNA-Seq reads from a mouse myoblast cell line representing a differentiation time series. We detected 13,692 known transcripts and 3,724 previously unannotated ones, 62% of which are supported by independent expression data or by homologous genes in other species. Analysis of transcript expression over the time series revealed complete switches in the dominant transcription start site (TSS) or splice-isoform in 330 genes, along with more subtle shifts in a further 1,304 genes. These dynamics suggest substantial regulatory flexibility and complexity in this well-studied model of muscle development.
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              TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

              TopHat is a popular spliced aligner for RNA-sequence (RNA-seq) experiments. In this paper, we describe TopHat2, which incorporates many significant enhancements to TopHat. TopHat2 can align reads of various lengths produced by the latest sequencing technologies, while allowing for variable-length indels with respect to the reference genome. In addition to de novo spliced alignment, TopHat2 can align reads across fusion breaks, which can occur after genomic translocations. TopHat2 combines the ability to identify novel splice sites with direct mapping to known transcripts, producing sensitive and accurate alignments, even for highly repetitive genomes or in the presence of pseudogenes. TopHat2 is available at http://ccb.jhu.edu/software/tophat.
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                Author and article information

                Contributors
                kitamura@ims.u-tokyo.ac.jp
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                23 March 2021
                23 March 2021
                2021
                : 12
                : 1826
                Affiliations
                [1 ]GRID grid.26999.3d, ISNI 0000 0001 2151 536X, Division of Cellular Therapy, The Institute of Medical Science, , The University of Tokyo, ; Minato-ku, Tokyo Japan
                [2 ]Department of Biochemistry, Keio University School of Medicine, and Japan Science and Technology Agency (JST), Exploratory Research for Advanced Technology (ERATO), Suematsu Gas Biology Project, Shinjuku-ku, Tokyo Japan
                [3 ]GRID grid.51462.34, ISNI 0000 0001 2171 9952, Human Oncology and Pathogenesis Program, , Memorial Sloan−Kettering Cancer Center and Weill Cornell Medical College, ; New York, USA
                [4 ]GRID grid.417982.1, ISNI 0000 0004 0623 246X, Department of Hematology-Oncology, Institute of Biomedical Research and Innovation, , Foundation for Biomedical Research and Innovation at Kobe, ; Kobe City, Hyogo Japan
                [5 ]GRID grid.410818.4, ISNI 0000 0001 0720 6587, Field of Human Disease Models, Major in Advanced Life Sciences and Medicine, , Tokyo Women’s Medical University, ; Shinjuku-ku, Tokyo Japan
                [6 ]GRID grid.26999.3d, ISNI 0000 0001 2151 536X, Laboratory of Molecular Medicine, Human Genome Center, The Institute of Medical Science, , The University of Tokyo, ; Minato-ku, Tokyo Japan
                [7 ]GRID grid.26999.3d, ISNI 0000 0001 2151 536X, Division of Clinical Genome Research, Advanced Clinical Research Center, The Institute of Medical Science, , The University of Tokyo, ; Minato-ku, Tokyo Japan
                [8 ]GRID grid.265073.5, ISNI 0000 0001 1014 9130, Department of Stem Cell Biology, Medical Research Institute, , Tokyo Medical and Dental University, ; Bunkyo-ku, Tokyo Japan
                Author information
                http://orcid.org/0000-0001-6116-7996
                http://orcid.org/0000-0002-0709-3188
                http://orcid.org/0000-0002-5767-8045
                http://orcid.org/0000-0002-3907-6171
                http://orcid.org/0000-0002-7165-6336
                http://orcid.org/0000-0001-7855-1767
                Article
                22053
                10.1038/s41467-021-22053-y
                7988019
                33758188
                e537c3ed-5be5-4c0b-b6ab-802c01a2a419
                © The Author(s) 2021

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 5 December 2019
                : 23 February 2021
                Funding
                Funded by: The Japan foundation for Aging and Health Suzuken Memorial Foundation
                Funded by: Infrastructure of metabolomics was partly supported by JST ERATO Suematsu Gas Biology (2010~2015)
                Funded by: Leukemia & Lymphoma Society Specialized Center for Research award The Edward P. Evans MDS Foundation The Henry & Marilun Taub Foundation
                Funded by: Grant-in-Aid for Scientific Research (B) (No. 15H04855) Grant-in-Aid for Scientific Research on Innovative Areas “Stem Cell Aging and Disease” (No. 17H05634) The Tokyo Biochemical Research Foundation Japanese Society of Hematology
                Categories
                Article
                Custom metadata
                © The Author(s) 2021

                Uncategorized
                myelodysplastic syndrome,tor signalling,ageing,haematopoietic stem cells
                Uncategorized
                myelodysplastic syndrome, tor signalling, ageing, haematopoietic stem cells

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