Journal ID (nlm-ta): PLoS One
Journal ID (iso-abbrev): PLoS ONE
Journal ID (publisher-id): plos
Journal ID (pmc): plosone
Title:
PLoS ONE
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Electronic):
1932-6203
Publication date
(Electronic):
21
June
2016
Publication date Collection: 2016
Volume: 11
Issue: 6
Electronic Location Identifier: e0157718
Affiliations
[1
]Department of Systems Biology, Technical University of Denmark, Kemitorvet Building
208, 2800 Kgs. Lyngby, Denmark
[2
]National Food Institute, Technical University of Denmark, Søltofts Plads Building
221, 2800 Kgs. Lyngby, Denmark
Tianjin University, CHINA
Author notes
Competing Interests: The authors have declared that no competing interests exist.
Conceived and designed the experiments: FMA OL MCFT. Performed the experiments: MCFT.
Analyzed the data: MCFT HH. Contributed reagents/materials/analysis tools: MCFT OL
JA VJ HH MVL JLBC. Wrote the paper: MCFT FMA OL.
Author information
Article
Publisher ID:
PONE-D-16-07802
DOI: 10.1371/journal.pone.0157718
PMC ID: 4915688
PubMed ID: 27327771
SO-VID: e8ffb819-10a5-410c-a066-f833790e4d2f
Copyright © © 2016 Thomsen et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
Funded by: funder-id http://dx.doi.org/10.13039/100007398, Strategiske Forskningsråd;
Award ID: 09-067103
Award Recipient
:
Frank Møller Aarestrup
Funded by: European Union’s Horizon 2020 research and innovation programme
Award ID: 643476
Award Recipient
:
Frank Møller Aarestrup
This work was supported by the Danish Council for Strategic Research (grant 09-067103)
to the Center for Genomic Epidemiology (
www.genomicepidemiology.org) and has received funding from the European Union’s Horizon 2020 research and innovation
programme under grant agreement no 643476 to the COMPARE project (
www.compare-europe.eu). The funders had no role in study design, data collection and analysis, decision
to publish, or preparation of the manuscript.
Subject:
Research Article
Subject:
Research and Analysis Methods
Subject:
Database and Informatics Methods
Subject:
Biological Databases
Subject:
Sequence Databases
Subject:
Biology and Life Sciences
Subject:
Molecular Biology
Subject:
Molecular Biology Techniques
Subject:
Sequencing Techniques
Subject:
Sequence Analysis
Subject:
Sequence Databases
Subject:
Research and Analysis Methods
Subject:
Molecular Biology Techniques
Subject:
Sequencing Techniques
Subject:
Sequence Analysis
Subject:
Sequence Databases
Subject:
Physical sciences
Subject:
Mathematics
Subject:
Applied mathematics
Subject:
Algorithms
Subject:
BLAST algorithm
Subject:
Research and analysis methods
Subject:
Simulation and modeling
Subject:
Algorithms
Subject:
BLAST algorithm
Subject:
Research and analysis methods
Subject:
Database and informatics methods
Subject:
Bioinformatics
Subject:
Software-aided sequence analysis
Subject:
BLAST algorithm
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Bacteria
Subject:
Staphylococcus
Subject:
Staphylococcus Aureus
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Medical Microbiology
Subject:
Microbial Pathogens
Subject:
Bacterial Pathogens
Subject:
Staphylococcus
Subject:
Staphylococcus Aureus
Subject:
Medicine and Health Sciences
Subject:
Pathology and Laboratory Medicine
Subject:
Pathogens
Subject:
Microbial Pathogens
Subject:
Bacterial Pathogens
Subject:
Staphylococcus
Subject:
Staphylococcus Aureus
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Microbial Control
Subject:
Antimicrobial Resistance
Subject:
Medicine and Health Sciences
Subject:
Pharmacology
Subject:
Antimicrobial Resistance
Subject:
Biology and Life Sciences
Subject:
Computational Biology
Subject:
Genome Analysis
Subject:
Gene Prediction
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Genome Analysis
Subject:
Gene Prediction
Subject:
Computer and Information Sciences
Subject:
Computer Applications
Subject:
Web-Based Applications
Subject:
Biology and Life Sciences
Subject:
Molecular Biology
Subject:
Molecular Biology Techniques
Subject:
Sequencing Techniques
Subject:
Genome Sequencing
Subject:
Research and Analysis Methods
Subject:
Molecular Biology Techniques
Subject:
Sequencing Techniques
Subject:
Genome Sequencing
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Bacteria
Subject:
Enterococcus
Subject:
Enterococcus Faecalis
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Medical Microbiology
Subject:
Microbial Pathogens
Subject:
Bacterial Pathogens
Subject:
Enterococcus
Subject:
Enterococcus Faecalis
Subject:
Medicine and Health Sciences
Subject:
Pathology and Laboratory Medicine
Subject:
Pathogens
Subject:
Microbial Pathogens
Subject:
Bacterial Pathogens
Subject:
Enterococcus
Subject:
Enterococcus Faecalis
