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      Machine Learning Methods in Drug Discovery

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          Abstract

          The advancements of information technology and related processing techniques have created a fertile base for progress in many scientific fields and industries. In the fields of drug discovery and development, machine learning techniques have been used for the development of novel drug candidates. The methods for designing drug targets and novel drug discovery now routinely combine machine learning and deep learning algorithms to enhance the efficiency, efficacy, and quality of developed outputs. The generation and incorporation of big data, through technologies such as high-throughput screening and high through-put computational analysis of databases used for both lead and target discovery, has increased the reliability of the machine learning and deep learning incorporated techniques. The use of these virtual screening and encompassing online information has also been highlighted in developing lead synthesis pathways. In this review, machine learning and deep learning algorithms utilized in drug discovery and associated techniques will be discussed. The applications that produce promising results and methods will be reviewed.

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          Deep learning.

          Deep learning allows computational models that are composed of multiple processing layers to learn representations of data with multiple levels of abstraction. These methods have dramatically improved the state-of-the-art in speech recognition, visual object recognition, object detection and many other domains such as drug discovery and genomics. Deep learning discovers intricate structure in large data sets by using the backpropagation algorithm to indicate how a machine should change its internal parameters that are used to compute the representation in each layer from the representation in the previous layer. Deep convolutional nets have brought about breakthroughs in processing images, video, speech and audio, whereas recurrent nets have shone light on sequential data such as text and speech.
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            Random Forests

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              Support-vector networks

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                Author and article information

                Contributors
                Role: Academic Editor
                Journal
                Molecules
                Molecules
                molecules
                Molecules
                MDPI
                1420-3049
                12 November 2020
                November 2020
                : 25
                : 22
                : 5277
                Affiliations
                [1 ]Chemistry Department, University of Arkansas at Little Rock, Little Rock, AR 72204, USA; lhpatel@ 123456ualr.edu (L.P.); tshukla@ 123456ualr.edu (T.S.)
                [2 ]Department of Computer Science, Arkansas State University, Jonesboro, AR 72467, USA; xhuang@ 123456astate.edu
                [3 ]Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA; DWUssery@ 123456uams.edu
                Author notes
                [* ]Correspondence: sxwang2@ 123456ualr.edu
                [†]

                These authors contributed equally to this work.

                Author information
                https://orcid.org/0000-0003-3632-5512
                https://orcid.org/0000-0002-7068-0756
                Article
                molecules-25-05277
                10.3390/molecules25225277
                7696134
                33198233
                e9a6e52d-fe1b-4c3d-8bed-bd7eb1edaf36
                © 2020 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 15 October 2020
                : 09 November 2020
                Categories
                Review

                machine learning,drug discovery,deep learning,in silico screening

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