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      MicroRNA-206 expression levels correlate with clinical behaviour of rhabdomyosarcomas

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          Abstract

          Background:

          Rhabdomyosarcomas (RMSs) are primarily paediatric sarcomas that resemble developing skeletal muscle. Our aim was to determine the effects of microRNAs (miRNA) that have been implicated in muscle development on the clinical behaviour of RMSs.

          Methods:

          Expression levels of miR-1, miR-206, miR-133a and miR-133b were quantified by RT–PCR in 163 primary paediatric RMSs, plus control tissues, and correlated with clinico-pathological features. Correlations with parallel gene expression profiling data for 84 samples were used to identify pathways associated with miR-206. Synthetic miR-206 was transfected into RMS cell lines and phenotypic responses assessed.

          Results:

          Muscle-specific miRNAs levels were lower in RMSs compared with skeletal muscle but generally higher than in other normal tissues. Low miR-206 expression correlated with poor overall survival and was an independent predictor of shorter survival in metastatic embryonal and alveolar cases without PAX3/7-FOXO1 fusion genes. Low miR-206 expression also significantly correlated with high SIOP stage and the presence of metastases at diagnosis. High miR-206 expression strongly correlated with genes linked to muscle differentiation and low expression was associated with genes linked to MAPkinase and NFKappaB pathway activation. Increasing miR-206 expression in cell lines inhibited cell growth and migration and induced apoptosis that was associated with myogenic differentiation in some, but not all, cell lines.

          Conclusion:

          miR-206 contributes to the clinical behaviour of RMSs and the pleiotropic effects of miR-206 supports therapeutic potential.

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          Most cited references38

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          MicroRNA biogenesis: coordinated cropping and dicing.

          V Kim (2005)
          The recent discovery of microRNAs (miRNAs) took many by surprise because of their unorthodox features and widespread functions. These tiny, approximately 22-nucleotide, RNAs control several pathways including developmental timing, haematopoiesis, organogenesis, apoptosis, cell proliferation and possibly even tumorigenesis. Among the most pressing questions regarding this unusual class of regulatory miRNA-encoding genes is how miRNAs are produced in cells and how the genes themselves are controlled by various regulatory networks.
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            Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes.

            MicroRNAs (miRNAs) are short endogenous RNAs known to post-transcriptionally repress gene expression in animals and plants. A microarray profiling survey revealed the expression patterns of 175 human miRNAs across 24 different human organs. Our results show that proximal pairs of miRNAs are generally coexpressed. In addition, an abrupt transition in the correlation between pairs of expressed miRNAs occurs at a distance of 50 kb, implying that miRNAs separated by <50 kb typically derive from a common transcript. Some microRNAs are within the introns of host genes. Intronic miRNAs are usually coordinately expressed with their host gene mRNA, implying that they also generally derive from a common transcript, and that in situ analyses of host gene expression can be used to probe the spatial and temporal localization of intronic miRNAs.
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              Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis.

              Gradients of signalling and transcription factors govern many aspects of embryogenesis, highlighting the need for spatiotemporal control of regulatory protein levels. MicroRNAs are phylogenetically conserved small RNAs that regulate the translation of target messenger RNAs, providing a mechanism for protein dose regulation. Here we show that microRNA-1-1 (miR-1-1) and miR-1-2 are specifically expressed in cardiac and skeletal muscle precursor cells. We found that the miR-1 genes are direct transcriptional targets of muscle differentiation regulators including serum response factor, MyoD and Mef2. Correspondingly, excess miR-1 in the developing heart leads to a decreased pool of proliferating ventricular cardiomyocytes. Using a new algorithm for microRNA target identification that incorporates features of RNA structure and target accessibility, we show that Hand2, a transcription factor that promotes ventricular cardiomyocyte expansion, is a target of miR-1. This work suggests that miR-1 genes titrate the effects of critical cardiac regulatory proteins to control the balance between differentiation and proliferation during cardiogenesis.
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                Author and article information

                Journal
                Br J Cancer
                British Journal of Cancer
                Nature Publishing Group
                0007-0920
                1532-1827
                25 May 2010
                08 June 2010
                08 June 2010
                : 102
                : 12
                : 1769-1777
                Affiliations
                [1 ]Molecular Cytogenetics Team, The Institute of Cancer Research Sutton, Surrey SM2 5NG, UK
                [2 ]Department of Histopathology, Royal Marsden NHS Trust London SW3 6JJ, UK
                [3 ]Institut Curie Paris 75248, France
                [4 ]Section of Paediatrics, The Institute of Cancer Research Sutton, Surrey SM2 5NG, UK
                [5 ]Department of Paediatrics, University Hospital, Catholic University of Leuven Leuven 3000, Belgium
                [6 ]Department of Pathology, University Hospital, Catholic University of Leuven Leuven 3000, Belgium
                [7 ]Whitehead Institute for Biomedical Research Cambridge, MA 02142, USA
                [8 ]Department of Paediatric Oncology, Institut Gustave-Roussy Villejuif Cedex 94805, France
                [9 ]INSERM, U830, Génétique et Biologie des Cancers Paris 75248, France
                Author notes
                [* ]Author for correspondence: janet.shipley@ 123456icr.ac.uk
                [10]

                These authors contributed equally to this work.

                Article
                6605684
                10.1038/sj.bjc.6605684
                2883695
                20502458
                f0866724-c272-4963-9e0b-120be61dc69e
                Copyright 2010, Cancer Research UK
                History
                : 19 January 2010
                : 29 March 2010
                : 12 April 2010
                Categories
                Molecular Diagnostics

                Oncology & Radiotherapy
                rhabdomyosarcoma,microrna,expression profile,overall survival,cell line
                Oncology & Radiotherapy
                rhabdomyosarcoma, microrna, expression profile, overall survival, cell line

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