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      Identification of oxidoreductases from the petroleum Bacillus safensis strain

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          Highlights

          • A bacterium responsible for degradation of the petroleum aromatic fractions was isolated.

          • The bacterium was identified as Bacillus safensis.

          • Enzymatic assays revealed the presence of two oxidoreductases.

          • The B. safensis strain can be used for bioremediation of petroleum-polluted environment.

          Abstract

          A gram-positive bacterium, denominated CFA-06, was isolated from Brazilian petroleum in the Campos Basin and is responsible for the degradation of aromatic compounds and petroleum aromatic fractions. The CFA-06 strain was identified as Bacillus safensis using the 16S rRNA and gyrase B sequence. Enzymatic assays revealed the presence of two oxidoreductases: a catalase and a new oxidoreductase. The oxidoreductases were enzymatically digested and analyzed via ESI-LTQ-Orbitrap mass spectrometry. The mass data revealed a novel oxidoreductase (named BsPMO) containing 224 amino acids and 89% homology with a hypothetic protein from B. safensis (CFA-06) and a catalase (named BsCat) with 491 amino acids and 60% similarity with the catalase from Bacillus pumilus (SAFR-032). The new protein BsPMO contains iron atom(s) and shows catalytic activity toward a monooxygenase fluorogenic probe in the presence of cofactors (NADH, NADPH and NAD). This study enhances our knowledge of the biodegradation process of petroleum by B. safensis.

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          Most cited references63

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          We describe a method, filter-aided sample preparation (FASP), which combines the advantages of in-gel and in-solution digestion for mass spectrometry-based proteomics. We completely solubilized the proteome in sodium dodecyl sulfate, which we then exchanged by urea on a standard filtration device. Peptides eluted after digestion on the filter were pure, allowing single-run analyses of organelles and an unprecedented depth of proteome coverage.
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            Nucleic Acid Techniques in Bacterial Systematics

            A comprehensive laboratory manual written by specialists who have made significant contributions to developments of these techniques. Considers all of the major nucleic acid based techniques that are revolutionizing bacterial classification and identification. Also provides a comparison of methods for converting molecular data to phylogenetic trees.
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              Oxidizing enzymes as biocatalysts.

              This article describes oxidising enzymes used for biocatalytic applications. Redox biocatalysts are highly sought after because of the selectivity, controllability and economy of their reactions, in comparison with conventional chemical reactions. Increasing numbers of oxidative biotransformations are being reported, indicating wide variability in the biocatalyst characteristics and a range of potential and established applications. Several limitations apply to oxidative biotransformations, including the requirement for cofactor regeneration, and low stability and activities. Recent advances in addressing these problems include molecular and reaction engineering approaches.
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                Author and article information

                Contributors
                Journal
                Biotechnol Rep (Amst)
                Biotechnol Rep (Amst)
                Biotechnology Reports
                Elsevier
                2215-017X
                05 September 2015
                December 2015
                05 September 2015
                : 8
                : 152-159
                Affiliations
                [a ]Chemistry Institute, University of Campinas, P.B 6154, 13083-970 Campinas, São Paulo, Brazil
                [b ]Institute of Agricultural Sciences, Federal University of Minas Gerais, 39404-547 Minas Gerais, Brazil
                [c ]Center for Molecular Biology and Genetic Engineering, University of Campinas, 13083-875 São Paulo, Brazil
                [d ]Microbial Resources Division, Research Center for Chemistry, Biology and Agriculture (CPQBA), University of Campinas, CP 6171, CEP 13081-970, Campinas, SP, Brazil
                [e ]National Institute of Metrology, Quality and Technology – INMETRO, Xerém, Rio de Janeiro, Brazil
                Author notes
                [* ]Corresponding author at: Chemistry Institute, University of Campinas, PB 6154, 13083-970 Campinas, São Paulo, Brazil. anita@ 123456iqm.unicamp.br
                Article
                S2215-017X(15)00051-X
                10.1016/j.btre.2015.09.001
                4980753
                f32a99c2-53d9-4092-b71d-a19458caa0fc
                © 2015 The Authors

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 7 July 2015
                : 25 August 2015
                : 2 September 2015
                Categories
                Article

                bacillus safensis,catalase,monooxygenase
                bacillus safensis, catalase, monooxygenase

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