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      Sequencing and analyzing complete mitochondrial DNA of Muscina angustifrons (Insecta, Diptera, Muscidae)

      research-article
      a , b , b , a
      Mitochondrial DNA. Part B, Resources
      Taylor & Francis
      Insecta, Diptera, Muscidae, complete mitochondrial genome, Muscina angustifrons

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          Abstract

          In this study, the complete mitochondrial genome sequenced and analyzed from a fly, Muscina angustifrons which collected from South Korea. The size of mitochondrial genome is 16,316 bp with 40.9% A, 12.3% C, 8.4% G and 38.4% T distribution. Furthermore, phylogenetic relationships of the superfamily Muscoidea evaluated due to mitochondrial protein coding genes. The results showed that the family Muscidae is a paraphyletic group and the closest species to M. angustifrons is M. levida. This is the third complete mitochondrial genome for the genus Muscina and the first genus record from South Korea.

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          How to sequence and annotate insect mitochondrial genomes for systematic and comparative genomics research

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            A Catalogue of the Muscidae (Diptera) of the Neotropical Region

            The Muscidae (Diptera) of the Neotropical Region are catalogued. 843 extant and 3 extinct species in 84 genera are listed together with their synonyms, giving a total of 1209 names. References are given to the original descriptions and the subsequent taxonomic, biological and applied literature, the location of types, and the geographic distribution. A comprehensive bibliography is provided. There are one new specific synonym, one new generic synonym, 15 new combinations, one new specific name, two new generic names, and one re-instated name (with a second one that is accepted here but is being formally re-instated in a paper listed as "in press").
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              Large-scale mitogenomics enables insights into Schizophora (Diptera) radiation and population diversity

              True flies are insects of the order Diptera and encompass one of the most diverse groups of animals on Earth. Within dipterans, Schizophora represents a recent radiation of insects that was used as a model to develop a pipeline for generating complete mitogenomes using various sequencing platforms and strategies. 91 mitogenomes from 32 different species were sequenced and assembled with high fidelity, using amplicon, whole genome shotgun or single molecule sequencing approaches. Based on the novel mitogenomes, we estimate the origin of Schizophora within the Cretaceous-Paleogene (K-Pg) boundary, about 68.3 Ma. Detailed analyses of the blowfly family (Calliphoridae) place its origin at 22 Ma, concomitant with the radiation of grazing mammals. The emergence of ectoparasitism within calliphorids was dated 6.95 Ma for the screwworm fly and 2.3 Ma for the Australian sheep blowfly. Varying population histories were observed for the blowfly Chrysomya megacephala and the housefly Musca domestica samples in our dataset. Whereas blowflies (n = 50) appear to have undergone selective sweeps and/or severe bottlenecks in the New World, houseflies (n = 14) display variation among populations from different zoogeographical zones and low levels of gene flow. The reported high-throughput mitogenomics approach for insects enables new insights into schizophoran diversity and population history of flies.
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                Author and article information

                Journal
                Mitochondrial DNA B Resour
                Mitochondrial DNA B Resour
                Mitochondrial DNA. Part B, Resources
                Taylor & Francis
                2380-2359
                21 February 2017
                2017
                : 2
                : 1
                : 115-116
                Affiliations
                [a ]Department of Life Science, Sangmyung University , Seoul, Republic of Korea;
                [b ]Department of Legal Medicine, Korea University College of Medicine , Seoul, Republic of Korea
                Author notes
                CONTACT Chang-Bae Kim evodevo@ 123456smu.ac.kr Department of Life Science, Sangmyung University , Seoul03016, Republic of Korea
                Article
                1289352
                10.1080/23802359.2017.1289352
                7800465
                f4df43dc-11f2-40f9-b362-a13f2899bcc3
                © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                Page count
                Figures: 1, Pages: 2, Words: 1002
                Categories
                Research Article
                Mitogenome Announcement

                insecta,diptera,muscidae,complete mitochondrial genome,muscina angustifrons

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