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      Self-assembling dipeptide antibacterial nanostructures with membrane disrupting activity

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          Abstract

          Peptide-based supramolecular assemblies are a promising class of nanomaterials with important biomedical applications, specifically in drug delivery and tissue regeneration. However, the intrinsic antibacterial capabilities of these assemblies have been largely overlooked. The recent identification of common characteristics shared by antibacterial and self-assembling peptides provides a paradigm shift towards development of antibacterial agents. Here we present the antibacterial activity of self-assembled diphenylalanine, which emerges as the minimal model for antibacterial supramolecular polymers. The diphenylalanine nano-assemblies completely inhibit bacterial growth, trigger upregulation of stress-response regulons, induce substantial disruption to bacterial morphology, and cause membrane permeation and depolarization. We demonstrate the specificity of these membrane interactions and the development of antibacterial materials by integration of the peptide assemblies into tissue scaffolds. This study provides important insights into the significance of the interplay between self-assembly and antimicrobial activity and establishes innovative design principles toward the development of antimicrobial agents and materials.

          Abstract

          Peptide-based supramolecular assemblies are a promising class of nanomaterials with important biomedical applications, but their antibacterial properties can be overlooked. Here the authors show the antibacterial activity of self-assembled diphenylalanine, which emerges as the minimal model for antibacterial supramolecular polymers.

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          Most cited references41

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          Fabrication of novel biomaterials through molecular self-assembly.

          Two complementary strategies can be used in the fabrication of molecular biomaterials. In the 'top-down' approach, biomaterials are generated by stripping down a complex entity into its component parts (for example, paring a virus particle down to its capsid to form a viral cage). This contrasts with the 'bottom-up' approach, in which materials are assembled molecule by molecule (and in some cases even atom by atom) to produce novel supramolecular architectures. The latter approach is likely to become an integral part of nanomaterials manufacture and requires a deep understanding of individual molecular building blocks and their structures, assembly properties and dynamic behaviors. Two key elements in molecular fabrication are chemical complementarity and structural compatibility, both of which confer the weak and noncovalent interactions that bind building blocks together during self-assembly. Using natural processes as a guide, substantial advances have been achieved at the interface of nanomaterials and biology, including the fabrication of nanofiber materials for three-dimensional cell culture and tissue engineering, the assembly of peptide or protein nanotubes and helical ribbons, the creation of living microlenses, the synthesis of metal nanowires on DNA templates, the fabrication of peptide, protein and lipid scaffolds, the assembly of electronic materials by bacterial phage selection, and the use of radiofrequency to regulate molecular behaviors.
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            Antimicrobial Peptides

            The rapid increase in drug-resistant infections has presented a serious challenge to antimicrobial therapies. The failure of the most potent antibiotics to kill “superbugs” emphasizes the urgent need to develop other control agents. Here we review the history and new development of antimicrobial peptides (AMPs), a growing class of natural and synthetic peptides with a wide spectrum of targets including viruses, bacteria, fungi, and parasites. We summarize the major types of AMPs, their modes of action, and the common mechanisms of AMP resistance. In addition, we discuss the principles for designing effective AMPs and the potential of using AMPs to control biofilms (multicellular structures of bacteria embedded in extracellular matrixes) and persister cells (dormant phenotypic variants of bacterial cells that are highly tolerant to antibiotics).
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              Self-assembly and application of diphenylalanine-based nanostructures.

              Micro- and nanostructures fabricated from biological building blocks have attracted tremendous attention owing to their potential for application in biology and in nanotechnology. Many biomolecules, including peptides and proteins, can interact and self-assemble into highly ordered supramolecular architectures with functionality. By imitating the processes where biological peptides or proteins are assembled in nature, one can delicately design and synthesize various peptide building blocks composed of several to dozens of amino acids for the creation of biomimetic or bioinspired nanostructured materials. This tutorial review aims to introduce a new kind of peptide building block, the diphenylalanine motif, extracted with inspiration of a pathogenic process towards molecular self-assembly. We highlight recent and current advances in fabrication and application of diphenylalanine-based peptide nanomaterials. We also highlight the preparation of such peptide-based nanostructures as nanotubes, spherical vesicles, nanofibrils, nanowires and hybrids through self-assembly, the improvement of their properties and the extension of their applications.
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                Author and article information

                Contributors
                william.degrado@ucsf.edu
                ehudg@post.tau.ac.il
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                8 November 2017
                8 November 2017
                2017
                : 8
                : 1365
                Affiliations
                [1 ]ISNI 0000 0004 1937 0546, GRID grid.12136.37, Department of Molecular Microbiology and Biotechnology, George S. Wise Faculty of Life Sciences, , Tel Aviv University, ; Tel Aviv, 69978 Israel
                [2 ]ISNI 0000 0001 2297 6811, GRID grid.266102.1, Department of Pharmaceutical Chemistry, , Cardiovascular Research Institute, University of California, ; San Francisco, CA 94158 USA
                [3 ]ISNI 0000 0004 1937 0546, GRID grid.12136.37, Department of Oral Biology, The Goldschleger School of Dental Medicine, Sackler Faculty of Medicine, , Tel Aviv University, ; Tel Aviv, 69978 Israel
                [4 ]ISNI 0000 0004 0604 7563, GRID grid.13992.30, Department of Chemical Research Support, , Weizmann Institute of Science, ; Rehovot, 76100 Israel
                [5 ]ISNI 0000 0004 1937 0511, GRID grid.7489.2, Ilse Katz Institute for Nanotechnology, , Ben Gurion University of the Negev, ; Beer Sheva, 84105 Israel
                [6 ]ISNI 0000 0004 1937 0546, GRID grid.12136.37, Department of Materials Science and Engineering, Iby and Aladar Fleischman Faculty of Engineering, , Tel Aviv University, ; Tel Aviv, 69978 Israel
                Author information
                http://orcid.org/0000-0002-7861-9247
                http://orcid.org/0000-0003-4745-263X
                Article
                1447
                10.1038/s41467-017-01447-x
                5678095
                29118336
                f54576cf-30f3-4f24-927c-769c952160d6
                © The Author(s) 2017

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 19 April 2017
                : 19 September 2017
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