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      Mechanisms Underlying the Regulation of HP1γ by the NGF-PKA Signaling Pathway

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          Abstract

          Heterochromatin protein 1 γ (HP1γ) is a well-known chromatin protein, which regulates gene silencing during the execution of processes associated with embryogenesis, organ maturation, and cell differentiation. We find that, in vivo, the levels of HP1γ are downregulated during nervous system development. Similar results are recapitulated in vitro during nerve growth factor (NGF)-induced neuronal cell differentiation in PC12 cells. Mechanistically, our experiments demonstrate that in differentiating PC12 cells, NGF treatment decreases the association of HP1γ to silent heterochromatin, leads to phosphorylation of this protein at S83 via protein kinase A (PKA), and ultimately results in its degradation. Genome-wide experiments, using gain-of-function (overexpression) and loss-of-function (RNAi) paradigms, demonstrate that changing the level of HP1γ impacts on PC12 differentiation, at least in part, through gene networks involved in this process. Hence, inactivation of HP1γ by different post-translational mechanisms, including reduced heterochromatin association, phosphorylation, and degradation, is necessary for neuronal cell differentiation to occur. Indeed, we show that the increase of HP1γ levels has the reverse effect, namely antagonizing neuronal cell differentiation, supporting that this protein acts as a barrier for this process. Thus, these results describe the regulation and participation of HP1γ in a novel membrane-to-nucleus pathway, through NGF-PKA signaling, which is involved in NGF-induced neuronal cell differentiation.

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          Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.

          Human embryonic stem cells (hESCs) share an identical genome with lineage-committed cells, yet possess the remarkable properties of self-renewal and pluripotency. The diverse cellular properties in different cells have been attributed to their distinct epigenomes, but how much epigenomes differ remains unclear. Here, we report that epigenomic landscapes in hESCs and lineage-committed cells are drastically different. By comparing the chromatin-modification profiles and DNA methylomes in hESCs and primary fibroblasts, we find that nearly one-third of the genome differs in chromatin structure. Most changes arise from dramatic redistributions of repressive H3K9me3 and H3K27me3 marks, which form blocks that significantly expand in fibroblasts. A large number of potential regulatory sequences also exhibit a high degree of dynamics in chromatin modifications and DNA methylation. Additionally, we observe novel, context-dependent relationships between DNA methylation and chromatin modifications. Our results provide new insights into epigenetic mechanisms underlying properties of pluripotency and cell fate commitment.
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            The interplay of epigenetic marks during stem cell differentiation and development

            Cell state transitions during embryonic development are associated with epigenetic changes that alter chromatin structure and gene expression. Interplay between epigenetic regulatory layers can be studied using genomic technologies and embryonic stem cell cultures that reflect in vivo cell states.
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              HP1 and the dynamics of heterochromatin maintenance.

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                Author and article information

                Contributors
                glomberk@mcw.edu
                rurrutia@mcw.edu
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                10 October 2018
                10 October 2018
                2018
                : 8
                : 15077
                Affiliations
                [1 ]GRID grid.429552.d, Lieber Institute for Brain Development, ; Baltimore, MD USA
                [2 ]ISNI 0000 0001 2111 8460, GRID grid.30760.32, Genomic Sciences and Precision Medicine Center (GSPMC), , Medical College of Wisconsin, ; Milwaukee, WI USA
                [3 ]ISNI 0000 0000 9632 6718, GRID grid.19006.3e, University of California, Los Angeles, Psychiatry Residency Program, ; Los Angeles, CA USA
                [4 ]ISNI 0000 0004 0459 167X, GRID grid.66875.3a, Department of Neuroscience, , Mayo Clinic, ; Rochester, MN USA
                [5 ]ISNI 0000 0001 0013 6651, GRID grid.411065.7, Centre Génomique du Centre de Recherche du CHUL Research Center, Ville de Québec, ; Quebec, Canada
                [6 ]ISNI 0000 0004 0459 167X, GRID grid.66875.3a, Department of Pharmacology and Experimental Therapeutics, , Mayo Clinic, ; Rochester, MN USA
                [7 ]ISNI 0000 0001 2176 4817, GRID grid.5399.6, Centre de Recherche en Cancérologie de Marseille (CRCM), INSERM U1068, CNRS UMR 7258, Institut Paoli-Calmettes, , Aix Marseille Université, ; Marseille, France
                [8 ]ISNI 0000 0001 2111 8460, GRID grid.30760.32, Division of Research, Department of Surgery, , Medical College of Wisconsin, ; Milwaukee, WI USA
                [9 ]ISNI 0000 0001 2111 8460, GRID grid.30760.32, Department of Pharmacology and Toxicology, , Medical College of Wisconsin, ; Milwaukee, WI USA
                Author information
                http://orcid.org/0000-0001-5463-789X
                http://orcid.org/0000-0002-1640-6780
                Article
                33475
                10.1038/s41598-018-33475-y
                6180112
                30305677
                f8507ce1-2f1d-4830-98be-72ae8bbfe42c
                © The Author(s) 2018

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 10 April 2018
                : 19 September 2018
                Funding
                Funded by: FundRef https://doi.org/10.13039/100000054, U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI);
                Award ID: CA178627
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100000062, U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases);
                Award ID: DK52913
                Award Recipient :
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