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      Tasselseed5 overexpresses a wound-inducible enzyme, ZmCYP94B1, that affects jasmonate catabolism, sex determination, and plant architecture in maize

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          Abstract

          Maize is monecious, with separate male and female inflorescences. Maize flowers are initially bisexual but achieve separate sexual identities through organ arrest. Loss-of-function mutants in the jasmonic acid (JA) pathway have only female flowers due to failure to abort silks in the tassel. Tasselseed5 ( Ts5) shares this phenotype but is dominant. Positional cloning and transcriptomics of tassels identified an ectopically expressed gene in the CYP94B subfamily, Ts5 (ZmCYP94B1). CYP94B enzymes are wound inducible and inactivate bioactive jasmonoyl-L-isoleucine (JA-Ile). Consistent with this result, tassels and wounded leaves of Ts5 mutants displayed lower JA and JA-lle precursors and higher 12OH-JA-lle product than the wild type. Furthermore, many wounding and jasmonate pathway genes were differentially expressed in Ts5 tassels. We propose that the Ts5 phenotype results from the interruption of JA signaling during sexual differentiation via the upregulation of ZmCYP94B1 and that its proper expression maintains maize monoecy.

          Abstract

          China Lunde et al. used cloning, transcriptomics, and metabolomics to identify the Tasselseed5 ( Ts5) gene in maize, and its role in the jasmonate metabolism. They find that the phenotype of the Ts5 mutants is the result of interrupted jasmonic acid signaling during sexual differentiation.

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          ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data

          The Environment for Tree Exploration (ETE) is a computational framework that simplifies the reconstruction, analysis, and visualization of phylogenetic trees and multiple sequence alignments. Here, we present ETE v3, featuring numerous improvements in the underlying library of methods, and providing a novel set of standalone tools to perform common tasks in comparative genomics and phylogenetics. The new features include (i) building gene-based and supermatrix-based phylogenies using a single command, (ii) testing and visualizing evolutionary models, (iii) calculating distances between trees of different size or including duplications, and (iv) providing seamless integration with the NCBI taxonomy database. ETE is freely available at http://etetoolkit.org
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            JAZ repressor proteins are targets of the SCF(COI1) complex during jasmonate signalling.

            Jasmonate and related signalling compounds have a crucial role in both host immunity and development in plants, but the molecular details of the signalling mechanism are poorly understood. Here we identify members of the jasmonate ZIM-domain (JAZ) protein family as key regulators of jasmonate signalling. JAZ1 protein acts to repress transcription of jasmonate-responsive genes. Jasmonate treatment causes JAZ1 degradation and this degradation is dependent on activities of the SCF(COI1) ubiquitin ligase and the 26S proteasome. Furthermore, the jasmonoyl-isoleucine (JA-Ile) conjugate, but not other jasmonate-derivatives such as jasmonate, 12-oxo-phytodienoic acid, or methyl-jasmonate, promotes physical interaction between COI1 and JAZ1 proteins in the absence of other plant proteins. Our results suggest a model in which jasmonate ligands promote the binding of the SCF(COI1) ubiquitin ligase to and subsequent degradation of the JAZ1 repressor protein, and implicate the SCF(COI1)-JAZ1 protein complex as a site of perception of the plant hormone JA-Ile.
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              (+)-7-iso-Jasmonoyl-L-isoleucine is the endogenous bioactive jasmonate.

              Hormone-triggered activation of the jasmonate signaling pathway in Arabidopsis thaliana requires SCF(COI1)-mediated proteasome degradation of JAZ repressors. (-)-JA-L-Ile is the proposed bioactive hormone, and SCF(COI1) is its likely receptor. We found that the biological activity of (-)-JA-L-Ile is unexpectedly low compared to coronatine and the synthetic isomer (+)-JA-L-Ile, which suggests that the stereochemical orientation of the cyclopentanone-ring side chains greatly affects receptor binding. Detailed GC-MS and HPLC analyses showed that the (-)-JA-L-Ile preparations currently used in ligand binding studies contain small amounts of the C7 epimer (+)-7-iso-JA-L-Ile. Purification of each of these molecules demonstrated that pure (-)-JA-L-Ile is inactive and that the active hormone is (+)-7-iso-JA-L-Ile, which is also structurally more similar to coronatine. In addition, we show that pH changes promote conversion of (+)-7-iso-JA-L-Ile to the inactive (-)-JA-L-Ile form, thus providing a simple mechanism that can regulate hormone activity through epimerization.
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                Author and article information

                Contributors
                hake@berkeley.edu
                Journal
                Commun Biol
                Commun Biol
                Communications Biology
                Nature Publishing Group UK (London )
                2399-3642
                25 March 2019
                25 March 2019
                2019
                : 2
                : 114
                Affiliations
                [1 ]ISNI 0000 0001 2181 7878, GRID grid.47840.3f, University of California, ; Berkeley, CA 94720 USA
                [2 ]GRID grid.465232.4, Plant Gene Expression Center, U.S. Department of Agriculture-Agricultural Research Service, ; 800 Buchanan Street, Albany, CA 94710 USA
                [3 ]ISNI 0000 0001 2162 3504, GRID grid.134936.a, Department of Biochemistry, , University of Missouri, ; Columbia, MO 65211 USA
                [4 ]ISNI 0000 0001 2162 3504, GRID grid.134936.a, Interdisciplinary Plant Group, , University of Missouri, ; Columbia, MO 65211 USA
                Author information
                http://orcid.org/0000-0003-0513-9709
                http://orcid.org/0000-0002-6623-1181
                http://orcid.org/0000-0003-2162-2987
                http://orcid.org/0000-0001-6953-1529
                Article
                354
                10.1038/s42003-019-0354-1
                6433927
                30937397
                fab32c30-ff28-4a59-99d0-e3839506c751
                © This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply 2019

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 9 August 2018
                : 13 February 2019
                Funding
                Funded by: FundRef https://doi.org/10.13039/100000001, National Science Foundation (NSF);
                Award ID: IOS-1612268
                Award ID: IOS-1557439
                Award ID: IOS-1238202
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100007917, United States Department of Agriculture | Agricultural Research Service (USDA Agricultural Research Service);
                Award ID: CRIS 2030-21000-052-00D
                Award Recipient :
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                © The Author(s) 2018

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