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      Structure of the nonameric bacterial amyloid secretion channel

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          Significance

          Numerous bacteria produce a unique class of “functional” amyloids termed curli that are important for the fitness of the organism by mediating biofilm formation, host cell adhesion, and colonization on inert surfaces. Here, we report the crystal structure of CsgG, a lipoprotein that forms a secretion channel for curli subunits in the outer membrane. Each CsgG monomer is composed of four β-strands that span the outer membrane. Nine CsgG monomers together form a large, 36-stranded β-barrel with a central secretion channel. The channel is restricted by stacked rings within the pore, formed from inwardly protruding residues. The CsgG structure may provide a template for the development of antibiotics aimed at attenuating biofilm formation.

          Abstract

          Various strains of bacteria are able to produce a unique class of functional amyloids termed curli, which are critical for biofilm formation, host cell adhesion, and colonization of inert surfaces. Curli are secreted via the type VIII bacterial secretion system, and they share biochemical and structural characteristics with amyloid fibers that have been implicated in deleterious disease in humans. Here, we report the crystal structure of Escherichia coli CsgG, which is an essential lipoprotein component of the type VIII secretion system and which forms a secretion channel in the bacterial outer membrane for transporting curli subunits. CsgG forms a crown-shaped, symmetric nonameric channel that spans the outer membrane via a 36-strand β-barrel, with each subunit contributing four β-strands. This nonameric complex contains a central channel with a pore located at the middle. The eyelet of the pore is ∼12 Å in diameter and is lined with three stacked nine-residue rings consisting of Tyr-66, Asn-70, or Phe-71. Our structure-based functional studies suggest that Tyr-66 and Phe-71 residues function as gatekeepers for the selective secretion of curli subunits. Our study describes in detail, to our knowledge, the first core structure of the type VIII bacterial secretion machinery. Importantly, our structural analysis suggests that the curli subunits are secreted via CsgG across the bacterial outer membrane in an unfolded form.

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          Most cited references23

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          Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels.

          Eukaryotic cells contain assemblies of RNAs and proteins termed RNA granules. Many proteins within these bodies contain KH or RRM RNA-binding domains as well as low complexity (LC) sequences of unknown function. We discovered that exposure of cell or tissue lysates to a biotinylated isoxazole (b-isox) chemical precipitated hundreds of RNA-binding proteins with significant overlap to the constituents of RNA granules. The LC sequences within these proteins are both necessary and sufficient for b-isox-mediated aggregation, and these domains can undergo a concentration-dependent phase transition to a hydrogel-like state in the absence of the chemical. X-ray diffraction and EM studies revealed the hydrogels to be composed of uniformly polymerized amyloid-like fibers. Unlike pathogenic fibers, the LC sequence-based polymers described here are dynamic and accommodate heterotypic polymerization. These observations offer a framework for understanding the function of LC sequences as well as an organizing principle for cellular structures that are not membrane bound. Copyright © 2012 Elsevier Inc. All rights reserved.
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            Protein misfolding, functional amyloid, and human disease.

            Peptides or proteins convert under some conditions from their soluble forms into highly ordered fibrillar aggregates. Such transitions can give rise to pathological conditions ranging from neurodegenerative disorders to systemic amyloidoses. In this review, we identify the diseases known to be associated with formation of fibrillar aggregates and the specific peptides and proteins involved in each case. We describe, in addition, that living organisms can take advantage of the inherent ability of proteins to form such structures to generate novel and diverse biological functions. We review recent advances toward the elucidation of the structures of amyloid fibrils and the mechanisms of their formation at a molecular level. Finally, we discuss the relative importance of the common main-chain and side-chain interactions in determining the propensities of proteins to aggregate and describe some of the evidence that the oligomeric fibril precursors are the primary origins of pathological behavior.
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              Common core structure of amyloid fibrils by synchrotron X-ray diffraction.

              Tissue deposition of normally soluble proteins as insoluble amyloid fibrils is associated with serious diseases including the systemic amyloidoses, maturity onset diabetes, Alzheimer's disease and transmissible spongiform encephalopathy. Although the precursor proteins in different diseases do not share sequence homology or related native structure, the morphology and properties of all amyloid fibrils are remarkably similar. Using intense synchrotron sources we observed that six different ex vivo amyloid fibrils and two synthetic fibril preparations all gave similar high-resolution X-ray fibre diffraction patterns, consistent with a helical array of beta-sheets parallel to the fibre long axis, with the strands perpendicular to this axis. This confirms that amyloid fibrils comprise a structural superfamily and share a common protofilament substructure, irrespective of the nature of their precursor proteins. Copyright 1997 Academic Press Limited.
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                Author and article information

                Journal
                Proceedings of the National Academy of Sciences
                Proc. Natl. Acad. Sci. U.S.A.
                Proceedings of the National Academy of Sciences
                0027-8424
                1091-6490
                December 16 2014
                December 2014
                December 16 2014
                : 111
                : 50
                Affiliations
                [1 ]National Laboratory of Biomacromolecules, National Center of Protein Science–Beijing, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China;
                [2 ]School of Life Sciences, University of Science and Technology of China, Hefei 230027, Anhui, China; and
                [3 ]University of Chinese Academy of Sciences, Beijing 100101, China
                Article
                10.1073/pnas.1411942111
                4273326
                25453093
                fce943e2-6bd0-40eb-8c74-8518a70b3d14
                © 2014
                History

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