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      Complete Genome Sequence of the Marine Bacterium Erythrobacter flavus Strain KJ5

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          Abstract

          Erythrobacter flavus strain KJ5 (formerly called Erythrobacter sp. strain KJ5) is a yellowish marine bacterium that was isolated from a hard coral in the Karimunjawa Islands of Indonesia.

          ABSTRACT

          Erythrobacter flavus strain KJ5 (formerly called Erythrobacter sp. strain KJ5) is a yellowish marine bacterium that was isolated from a hard coral in the Karimunjawa Islands of Indonesia. Here, we report the complete genome sequence of the bacterium and provide a useful resource for studies of the biosynthetic pathways of its unique carotenoids.

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          DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication

          Yasuhiro Tanizawa, Takatomo Fujisawa, Yasukazu Nakamura (2017)
          Abstract Summary We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequence databases. DFAST was originally started as an on-line annotation server, and to date, over 7000 jobs have been processed since its first launch in 2016. Here, we present a newly implemented background annotation engine for DFAST, which is also available as a standalone command-line program. The new engine can annotate a typical-sized bacterial genome within 10 min, with rich information such as pseudogenes, translation exceptions and orthologous gene assignment between given reference genomes. In addition, the modular framework of DFAST allows users to customize the annotation workflow easily and will also facilitate extensions for new functions and incorporation of new tools in the future. Availability and implementation The software is implemented in Python 3 and runs in both Python 2.7 and 3.4—on Macintosh and Linux systems. It is freely available at https://github.com/nigyta/dfast_core/under the GPLv3 license with external binaries bundled in the software distribution. An on-line version is also available at https://dfast.nig.ac.jp/. Contact yn@nig.ac.jp Supplementary information Supplementary data are available at Bioinformatics online.
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            Preliminary investigation of the carotenoid composition of Erythrobacter sp. Strain KJ5 by high-performance liquid chromatography and mass spectrometry

            AD Juliadiningtyas, D Pringgenies, Heriyanto … (2018)
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              Exploration, isolation and quantification of β-carotene from bacterial symbion of Acropora sp.

              N.K. Wusqy, L. Limantara, F.F. Karwur … (2014)
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                Author and article information

                Contributors
                J. Cameron Thrash: Role: Editor
                Journal
                Journal ID (nlm-ta): Microbiol Resour Announc
                Journal ID (iso-abbrev): Microbiol Resour Announc
                Journal ID (hwp): ga
                Journal ID (pmc): mra
                Journal ID (publisher-id): MRA
                Title: Microbiology Resource Announcements
                Publisher: American Society for Microbiology (1752 N St., N.W., Washington, DC )
                ISSN (Electronic): 2576-098X
                Publication date (Electronic): 28 March 2019
                Publication date Collection: March 2019
                Volume: 8
                Issue: 13
                Electronic Location Identifier: e00140-19
                Affiliations
                [a ]Research Institute of Green Science and Technology, Shizuoka University, Shizuoka, Japan
                [b ]Ma Chung Research Center for Photosynthetic Pigments, Universitas Ma Chung, Malang, Indonesia
                [c ]Faculty of Fisheries and Marine Science, Diponegoro University, Semarang, Indonesia
                [d ]Department of Biological Science, Faculty of Science, Shizuoka University, Shizuoka, Japan
                [e ]Research Institute of Electronics, Shizuoka University, Shizuoka, Japan
                University of Southern California
                Author notes
                Address correspondence to Koichiro Awai, awai.koichiro@ 123456shizuoka.ac.jp .

                Citation Kanesaki Y, Setiyono E, Pringgenies D, Moriuchi R, Brotosudarmo THP, Awai K. 2019. Complete genome sequence of the marine bacterium Erythrobacter flavus strain KJ5. Microbiol Resour Announc 8:e00140-19. https://doi.org/10.1128/MRA.00140-19.

                Author information
                https://orcid.org/0000-0002-1731-7499
                Article
                Publisher ID: MRA00140-19
                DOI: 10.1128/MRA.00140-19
                PMC ID: 6439247
                PubMed ID: 30923244
                SO-VID: fe5e9f72-3381-430d-8a42-cd8682e0dca3
                Copyright © Copyright © 2019 Kanesaki et al.
                License:

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                Date received : 12 February 2019
                Date accepted : 4 March 2019
                Page count
                Figures: 0, Tables: 0, Equations: 0, References: 7, Pages: 2, Words: 1160
                Funding
                Funded by: Ministry of Research, Technology and Higher Education of the Republic of Indonesia;
                Award ID: 061/SP2H/LT/K7/KM/2018
                Award ID: 7/E/KPT/2019
                Award Recipient :
                Categories
                Subject: Genome Sequences
                Custom metadata
                cover-date March 2019

                Data availability:

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