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      Gut Microbiota, Blood Metabolites, and Spleen Immunity in Broiler Chickens Fed Berry Pomaces and Phenolic-Enriched Extractives

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          Abstract

          This study evaluated the performance, gut microbiota, and blood metabolites in broiler chickens fed cranberry and blueberry products for 30 days. A total of 2,800 male day-old broiler Cobb-500 chicks were randomly distributed between 10 diets: control basal diet; basal diet with bacitracin (BACI); four basal diets with 1 and 2% of cranberry (CP1, CP2) and blueberry (BP1, BP2) pomaces; and four basal diets supplemented with ethanolic extracts of cranberry (COH150, COH300) or blueberry (BOH150, BOH300) pomaces. All groups were composed of seven replicates (40 birds per replicate). Cecal and cloacal samples were collected for bacterial counts and 16S rRNA gene sequencing. Blood samples and spleens were analyzed for blood metabolites and gene expressions, respectively. The supplementation of COH300 and BOH300 significantly increased the body weight (BW) during the starting and growing phases, respectively, while COH150 improved ( P < 0.05) the overall cumulated feed efficiency (FE) compared to control. The lowest prevalence ( P = 0.01) of necrotic enteritis was observed with CP1 and BP1 compared to BACI and control. Cranberry pomace significantly increased the quinic acid level in blood plasma compared to other treatments. At days 21 and 28 of age, the lowest ( P < 0.05) levels of triglyceride and alanine aminotransferase were observed in cranberry pomace and blueberry product–fed birds, respectively suggesting that berry feeding influenced the lipid metabolism and serum enzyme levels. The highest relative abundance of Lactobacillaceae was found in ceca of birds fed CP2 ( P < 0.05). In the cloaca, BOH300 significantly ( P < 0.005) increased the abundances of Acidobacteria and Lactobacillaceae. Actinobacteria showed a significant ( P < 0.05) negative correlation with feed intake (FI) and FE in COH300-treated birds, whereas Proteobacteria positively correlated with the BW but negatively correlated with FI and FE, during the growing phase. In the spleen, cranberry products did not induce the release of any pro-inflammatory cytokines but upregulated the expression of several genes (IL4, IL5, CSF2, and HMBS) involved in adaptive immune responses in broilers. This study demonstrated that feed supplementation with berry products could promote the intestinal health by modulating the dynamics of the gut microbiota while influencing the metabolism in broilers.

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          QIIME allows analysis of high-throughput community sequencing data.

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            Search and clustering orders of magnitude faster than BLAST.

            Biological sequence data is accumulating rapidly, motivating the development of improved high-throughput methods for sequence classification. UBLAST and USEARCH are new algorithms enabling sensitive local and global search of large sequence databases at exceptionally high speeds. They are often orders of magnitude faster than BLAST in practical applications, though sensitivity to distant protein relationships is lower. UCLUST is a new clustering method that exploits USEARCH to assign sequences to clusters. UCLUST offers several advantages over the widely used program CD-HIT, including higher speed, lower memory use, improved sensitivity, clustering at lower identities and classification of much larger datasets. Binaries are available at no charge for non-commercial use at http://www.drive5.com/usearch.
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              Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

              A 16S rRNA gene database ( http://greengenes.lbl.gov ) addresses limitations of public repositories by providing chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies. It was found that there is incongruent taxonomic nomenclature among curators even at the phylum level. Putative chimeras were identified in 3% of environmental sequences and in 0.2% of records derived from isolates. Environmental sequences were classified into 100 phylum-level lineages in the Archaea and Bacteria .
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                Author and article information

                Contributors
                Journal
                Front Vet Sci
                Front Vet Sci
                Front. Vet. Sci.
                Frontiers in Veterinary Science
                Frontiers Media S.A.
                2297-1769
                22 April 2020
                2020
                : 7
                : 150
                Affiliations
                [1] 1Department of Food Science, University of Guelph , Guelph, ON, Canada
                [2] 2Guelph Research and Development Centre, Agriculture and Agri-Food Canada , Guelph, ON, Canada
                [3] 3Summerland Research and Development Centre, Agriculture and Agri-Food Canada , Summerland, BC, Canada
                [4] 4Centre de Recherche en Sciences Animales de Deschambault , Deschambault, QC, Canada
                Author notes

                Edited by: Rodrigo Guabiraba, INRA Centre Val de Loire, France

                Reviewed by: Ahmed Ali, Beni Suef university, Egypt; Laura Glendinning, University of Edinburgh, United Kingdom

                *Correspondence: Moussa S. Diarra moussa.diarra@ 123456canada.ca

                This article was submitted to Veterinary Infectious Diseases, a section of the journal Frontiers in Veterinary Science

                Article
                10.3389/fvets.2020.00150
                7188780
                33134328
                14b473a9-b672-41f9-8345-964eb8c83d5d
                Copyright © 2020 Her Majesty the Queen in Right of Canada, as represented by the Minister of Agriculture and Agri-Food Canada.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 13 January 2020
                : 02 March 2020
                Page count
                Figures: 4, Tables: 9, Equations: 0, References: 67, Pages: 19, Words: 13265
                Categories
                Veterinary Science
                Original Research

                broilers,cranberry and blueberry pomaces,blood metabolites,gut microbiota,spleen,immunity

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