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      Circulating tumor nucleic acids: biology, release mechanisms, and clinical relevance

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          Abstract

          Background

          Despite advances in early detection and therapies, cancer is still one of the most common causes of death worldwide. Since each tumor is unique, there is a need to implement personalized care and develop robust tools for monitoring treatment response to assess drug efficacy and prevent disease relapse.

          Main body

          Recent developments in liquid biopsies have enabled real-time noninvasive monitoring of tumor burden through the detection of molecules shed by tumors in the blood. These molecules include circulating tumor nucleic acids (ctNAs), comprising cell-free DNA or RNA molecules passively and/or actively released from tumor cells. Often highlighted for their diagnostic, predictive, and prognostic potential, these biomarkers possess valuable information about tumor characteristics and evolution. While circulating tumor DNA (ctDNA) has been in the spotlight for the last decade, less is known about circulating tumor RNA (ctRNA). There are unanswered questions about why some tumors shed high amounts of ctNAs while others have undetectable levels. Also, there are gaps in our understanding of associations between tumor evolution and ctNA characteristics and shedding kinetics. In this review, we summarize current knowledge about ctNA biology and release mechanisms and put this information into the context of tumor evolution and clinical utility.

          Conclusions

          A deeper understanding of the biology of ctDNA and ctRNA may inform the use of liquid biopsies in personalized medicine to improve cancer patient outcomes.

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          Most cited references212

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          Global cancer statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries

          This article provides an update on the global cancer burden using the GLOBOCAN 2020 estimates of cancer incidence and mortality produced by the International Agency for Research on Cancer. Worldwide, an estimated 19.3 million new cancer cases (18.1 million excluding nonmelanoma skin cancer) and almost 10.0 million cancer deaths (9.9 million excluding nonmelanoma skin cancer) occurred in 2020. Female breast cancer has surpassed lung cancer as the most commonly diagnosed cancer, with an estimated 2.3 million new cases (11.7%), followed by lung (11.4%), colorectal (10.0 %), prostate (7.3%), and stomach (5.6%) cancers. Lung cancer remained the leading cause of cancer death, with an estimated 1.8 million deaths (18%), followed by colorectal (9.4%), liver (8.3%), stomach (7.7%), and female breast (6.9%) cancers. Overall incidence was from 2-fold to 3-fold higher in transitioned versus transitioning countries for both sexes, whereas mortality varied <2-fold for men and little for women. Death rates for female breast and cervical cancers, however, were considerably higher in transitioning versus transitioned countries (15.0 vs 12.8 per 100,000 and 12.4 vs 5.2 per 100,000, respectively). The global cancer burden is expected to be 28.4 million cases in 2040, a 47% rise from 2020, with a larger increase in transitioning (64% to 95%) versus transitioned (32% to 56%) countries due to demographic changes, although this may be further exacerbated by increasing risk factors associated with globalization and a growing economy. Efforts to build a sustainable infrastructure for the dissemination of cancer prevention measures and provision of cancer care in transitioning countries is critical for global cancer control.
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            The biology, function, and biomedical applications of exosomes

            The study of extracellular vesicles (EVs) has the potential to identify unknown cellular and molecular mechanisms in intercellular communication and in organ homeostasis and disease. Exosomes, with an average diameter of ~100 nanometers, are a subset of EVs. The biogenesis of exosomes involves their origin in endosomes, and subsequent interactions with other intracellular vesicles and organelles generate the final content of the exosomes. Their diverse constituents include nucleic acids, proteins, lipids, amino acids, and metabolites, which can reflect their cell of origin. In various diseases, exosomes offer a window into altered cellular or tissue states, and their detection in biological fluids potentially offers a multicomponent diagnostic readout. The efficient exchange of cellular components through exosomes can inform their applied use in designing exosome-based therapeutics.
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              Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018

              Over the past decade, the Nomenclature Committee on Cell Death (NCCD) has formulated guidelines for the definition and interpretation of cell death from morphological, biochemical, and functional perspectives. Since the field continues to expand and novel mechanisms that orchestrate multiple cell death pathways are unveiled, we propose an updated classification of cell death subroutines focusing on mechanistic and essential (as opposed to correlative and dispensable) aspects of the process. As we provide molecularly oriented definitions of terms including intrinsic apoptosis, extrinsic apoptosis, mitochondrial permeability transition (MPT)-driven necrosis, necroptosis, ferroptosis, pyroptosis, parthanatos, entotic cell death, NETotic cell death, lysosome-dependent cell death, autophagy-dependent cell death, immunogenic cell death, cellular senescence, and mitotic catastrophe, we discuss the utility of neologisms that refer to highly specialized instances of these processes. The mission of the NCCD is to provide a widely accepted nomenclature on cell death in support of the continued development of the field.
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                Author and article information

                Contributors
                pavel.stejskal@upol.cz
                hani.goodarzi@ucsf.edu
                josef.srovnal@upol.cz
                marian.hajduch@upol.cz
                laura.vantveer@ucsf.edu
                mark.magbanua@ucsf.edu
                Journal
                Mol Cancer
                Mol Cancer
                Molecular Cancer
                BioMed Central (London )
                1476-4598
                21 January 2023
                21 January 2023
                2023
                : 22
                : 15
                Affiliations
                [1 ]GRID grid.489334.1, Institute of Molecular and Translational Medicine, Faculty of Medicine and Dentistry, Palacký University and University Hospital in Olomouc, ; Olomouc, 779 00 Czech Republic
                [2 ]GRID grid.266102.1, ISNI 0000 0001 2297 6811, Department of Biochemistry and Biophysics, , University of California San Francisco, ; San Francisco, CA 94158 USA
                [3 ]GRID grid.266102.1, ISNI 0000 0001 2297 6811, Department of Urology, , University of California San Francisco, ; San Francisco, CA 94158 USA
                [4 ]GRID grid.266102.1, ISNI 0000 0001 2297 6811, Department of Laboratory Medicine, , University of California San Francisco, ; 2340 Sutter Street, San Francisco, CA USA
                Article
                1710
                10.1186/s12943-022-01710-w
                9862574
                36681803
                158027cc-a856-4680-9e7c-dee96fe66366
                © The Author(s) 2023

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

                History
                : 3 November 2022
                : 29 December 2022
                Funding
                Funded by: Ministry of Health of the Czech Republic
                Award ID: NV18-03-00470
                Award ID: NV18-03-00470
                Award ID: NV18-03-00470
                Funded by: Ministry of Education, Youth and Sport of the Czech Republic
                Award ID: LM2018132
                Award ID: LM2018132
                Award ID: LM2018132
                Funded by: European Union - Next Generation EU
                Award ID: LX22NPO5102
                Award ID: LX22NPO5102
                Award ID: LX22NPO5102
                Funded by: FundRef http://dx.doi.org/10.13039/501100008530, European Regional Development Fund;
                Award ID: ACGT CZ.02.1.01/0.0/0.0/16_026/0008448
                Award ID: ACGT CZ.02.1.01/0.0/0.0/16_026/0008448
                Award ID: ACGT CZ.02.1.01/0.0/0.0/16_026/0008448
                Funded by: Era of Hope Scholar
                Award ID: W81XWH-2210121
                Funded by: The National Institutes of Health
                Award ID: R01CA240984
                Award ID: R01 CA255442
                Award ID: R01 CA255442
                Funded by: FundRef http://dx.doi.org/10.13039/100001006, Breast Cancer Research Foundation;
                Award ID: BCRF-20-142
                Funded by: Cancer Cell Mapping Initiative
                Award ID: U54 CA274502
                Funded by: UCSF Breast Oncology Program Research Development Award, and the Cancer Cell Mapping Initiative
                Award ID: 7030559
                Categories
                Review
                Custom metadata
                © The Author(s) 2023

                Oncology & Radiotherapy
                circulating tumor dna,circulating tumor rna,cell-free dna,shedding mechanisms,liquid biopsy,biomarkers,precision oncology,clinical application

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