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      Plasmodium falciparum Calcium-Dependent Protein Kinase 4 is Critical for Male Gametogenesis and Transmission to the Mosquito Vector

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          ABSTRACT

          Gametocytes of the malaria parasite Plasmodium are taken up by the mosquito vector with an infectious blood meal, representing a critical stage for parasite transmission. Calcium-independent protein kinases (CDPKs) play key roles in calcium-mediated signaling across the complex life cycle of the parasite. We sought to understand their role in human parasite transmission from the host to the mosquito vector and thus investigated the role of the human-infective parasite Plasmodium falciparum CDPK4 in the parasite life cycle. P. falciparum cdpk4 parasites created by targeted gene deletion showed no effect in blood stage development or gametocyte development. However, cdpk4 parasites showed a severe defect in male gametogenesis and the emergence of flagellated male gametes. To understand the molecular underpinnings of this defect, we performed mass spectrometry-based phosphoproteomic analyses of wild-type and Plasmodium falciparum cdpk4 late gametocyte stages to identify key CDPK4-mediated phosphorylation events that may be important for the regulation of male gametogenesis. We further employed in vitro assays to identify these putative substrates of Plasmodium falciparum CDPK4. This indicated that CDPK4 regulates male gametogenesis by directly or indirectly controlling key essential events, such as DNA replication, mRNA translation, and cell motility. Taken together, our work demonstrates that PfCDPK4 is a central kinase that regulates exflagellation and thereby is critical for parasite transmission to the mosquito vector.

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            Abstract The UniProt Knowledgebase is a collection of sequences and annotations for over 120 million proteins across all branches of life. Detailed annotations extracted from the literature by expert curators have been collected for over half a million of these proteins. These annotations are supplemented by annotations provided by rule based automated systems, and those imported from other resources. In this article we describe significant updates that we have made over the last 2 years to the resource. We have greatly expanded the number of Reference Proteomes that we provide and in particular we have focussed on improving the number of viral Reference Proteomes. The UniProt website has been augmented with new data visualizations for the subcellular localization of proteins as well as their structure and interactions. UniProt resources are available under a CC-BY (4.0) license via the web at https://www.uniprot.org/.
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              MEME Suite: tools for motif discovery and searching

              The MEME Suite web server provides a unified portal for online discovery and analysis of sequence motifs representing features such as DNA binding sites and protein interaction domains. The popular MEME motif discovery algorithm is now complemented by the GLAM2 algorithm which allows discovery of motifs containing gaps. Three sequence scanning algorithms—MAST, FIMO and GLAM2SCAN—allow scanning numerous DNA and protein sequence databases for motifs discovered by MEME and GLAM2. Transcription factor motifs (including those discovered using MEME) can be compared with motifs in many popular motif databases using the motif database scanning algorithm Tomtom. Transcription factor motifs can be further analyzed for putative function by association with Gene Ontology (GO) terms using the motif-GO term association tool GOMO. MEME output now contains sequence LOGOS for each discovered motif, as well as buttons to allow motifs to be conveniently submitted to the sequence and motif database scanning algorithms (MAST, FIMO and Tomtom), or to GOMO, for further analysis. GLAM2 output similarly contains buttons for further analysis using GLAM2SCAN and for rerunning GLAM2 with different parameters. All of the motif-based tools are now implemented as web services via Opal. Source code, binaries and a web server are freely available for noncommercial use at http://meme.nbcr.net.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                mBio
                mBio
                mbio
                mBio
                American Society for Microbiology (1752 N St., N.W., Washington, DC )
                2150-7511
                2 November 2021
                Nov-Dec 2021
                2 November 2021
                : 12
                : 6
                : e02575-21
                Affiliations
                [a ] Center for Global Infectious Disease Research, Seattle Children’s Research Institute, Seattle, Washington, USA
                [b ] Institute for Systems Biology, Seattle, Washington, USA
                [c ] Department of Medicine, Division of Allergy and Infectious Diseases, Center for Emerging and Reemerging Infectious Diseases (CERID), University of Washington, Seattle, Washington, USA
                [d ] Department of Global Health, University of Washington, Seattle, Washington, USA
                [e ] Department of Pediatrics, University of Washington, Seattle, Washington, USA
                Albert Einstein College of Medicine
                Author notes

                Sudhir Kumar and Kristian E. Swearingen contributed equally to this work. Author order was based on seniority.

                Author information
                https://orcid.org/0000-0002-2847-393X
                https://orcid.org/0000-0001-7029-7792
                https://orcid.org/0000-0002-9626-9439
                https://orcid.org/0000-0002-3386-5233
                https://orcid.org/0000-0001-6454-8970
                https://orcid.org/0000-0002-2007-2170
                https://orcid.org/0000-0001-6162-7577
                https://orcid.org/0000-0001-5815-756X
                https://orcid.org/0000-0002-3216-9447
                https://orcid.org/0000-0003-1540-1731
                https://orcid.org/0000-0002-6756-4471
                Article
                mBio02575-21 mbio.02575-21
                10.1128/mBio.02575-21
                8561384
                34724830
                1787823e-75f4-4f21-ab07-73c5c239cb1d
                Copyright © 2021 Kumar et al.

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                : 1 September 2021
                : 23 September 2021
                Page count
                supplementary-material: 7, Figures: 7, Tables: 1, Equations: 0, References: 55, Pages: 20, Words: 13132
                Funding
                Funded by: HHS | National Institutes of Health (NIH), FundRef https://doi.org/10.13039/100000002;
                Award ID: NIH NIAID K25AI119229
                Award Recipient :
                Funded by: HHS | National Institutes of Health (NIH), FundRef https://doi.org/10.13039/100000002;
                Award ID: NIH NIAID R01AI148489
                Award Recipient :
                Funded by: HHS | National Institutes of Health (NIH), FundRef https://doi.org/10.13039/100000002;
                Award ID: NIH NIAID P01 AI27338
                Award Recipient :
                Funded by: HHS | National Institutes of Health (NIH), FundRef https://doi.org/10.13039/100000002;
                Award ID: NIH NIAID P01 AI27338
                Award Recipient :
                Funded by: HHS | National Institutes of Health (NIH), FundRef https://doi.org/10.13039/100000002;
                Award ID: R21AI123690
                Award Recipient :
                Funded by: HHS | National Institutes of Health (NIH), FundRef https://doi.org/10.13039/100000002;
                Award ID: NIH NIGMS R01GM087221
                Award Recipient :
                Funded by: HHS | National Institutes of Health (NIH), FundRef https://doi.org/10.13039/100000002;
                Award ID: NIH S10OD026936
                Award Recipient :
                Funded by: National Science Foundation (NSF), FundRef https://doi.org/10.13039/100000001;
                Award ID: NSF DBI-1920268
                Award Recipient :
                Categories
                Research Article
                genetics-and-molecular-biology, Genetics and Molecular Biology
                Custom metadata
                November/December 2021

                Life sciences
                pfcdpk4,exflagellation,gametocyte,mosquito,transmission,phosphoproteome
                Life sciences
                pfcdpk4, exflagellation, gametocyte, mosquito, transmission, phosphoproteome

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