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      Receptor-interacting protein kinase 1 (RIPK1) as a therapeutic target

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          Abstract

          Receptor-interacting serine/threonine-protein kinase 1 (RIPK1) is a key mediator of cell death and inflammation. The unique hydrophobic pocket in the allosteric regulatory domain of RIPK1 has enabled the development of highly selective small-molecule inhibitors of its kinase activity, which have demonstrated safety in preclinical models and clinical trials. Potential applications of these RIPK1 inhibitors for the treatment of monogenic and polygenic autoimmune, inflammatory, neurodegenerative, ischaemic and acute conditions, such as sepsis, are emerging. This article reviews RIPK1 biology and disease-associated mutations in RIPK1 signalling pathways, highlighting clinical trials of RIPK1 inhibitors and potential strategies to mitigate development challenges.

          Abstract

          Receptor-interacting serine/threonine-protein kinase 1 (RIPK1) — a key mediator of cell death and inflammation — is activated in human diseases. Here, Yuan and colleagues discuss current understanding of RIPK1 biology and its association with diseases including inflammatory and autoimmune disorders, neurodegenerative diseases and sepsis. The clinical development of small-molecule RIPK1 inhibitors and associated challenges are discussed.

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          Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China

          Summary Background A recent cluster of pneumonia cases in Wuhan, China, was caused by a novel betacoronavirus, the 2019 novel coronavirus (2019-nCoV). We report the epidemiological, clinical, laboratory, and radiological characteristics and treatment and clinical outcomes of these patients. Methods All patients with suspected 2019-nCoV were admitted to a designated hospital in Wuhan. We prospectively collected and analysed data on patients with laboratory-confirmed 2019-nCoV infection by real-time RT-PCR and next-generation sequencing. Data were obtained with standardised data collection forms shared by WHO and the International Severe Acute Respiratory and Emerging Infection Consortium from electronic medical records. Researchers also directly communicated with patients or their families to ascertain epidemiological and symptom data. Outcomes were also compared between patients who had been admitted to the intensive care unit (ICU) and those who had not. Findings By Jan 2, 2020, 41 admitted hospital patients had been identified as having laboratory-confirmed 2019-nCoV infection. Most of the infected patients were men (30 [73%] of 41); less than half had underlying diseases (13 [32%]), including diabetes (eight [20%]), hypertension (six [15%]), and cardiovascular disease (six [15%]). Median age was 49·0 years (IQR 41·0–58·0). 27 (66%) of 41 patients had been exposed to Huanan seafood market. One family cluster was found. Common symptoms at onset of illness were fever (40 [98%] of 41 patients), cough (31 [76%]), and myalgia or fatigue (18 [44%]); less common symptoms were sputum production (11 [28%] of 39), headache (three [8%] of 38), haemoptysis (two [5%] of 39), and diarrhoea (one [3%] of 38). Dyspnoea developed in 22 (55%) of 40 patients (median time from illness onset to dyspnoea 8·0 days [IQR 5·0–13·0]). 26 (63%) of 41 patients had lymphopenia. All 41 patients had pneumonia with abnormal findings on chest CT. Complications included acute respiratory distress syndrome (12 [29%]), RNAaemia (six [15%]), acute cardiac injury (five [12%]) and secondary infection (four [10%]). 13 (32%) patients were admitted to an ICU and six (15%) died. Compared with non-ICU patients, ICU patients had higher plasma levels of IL2, IL7, IL10, GSCF, IP10, MCP1, MIP1A, and TNFα. Interpretation The 2019-nCoV infection caused clusters of severe respiratory illness similar to severe acute respiratory syndrome coronavirus and was associated with ICU admission and high mortality. Major gaps in our knowledge of the origin, epidemiology, duration of human transmission, and clinical spectrum of disease need fulfilment by future studies. Funding Ministry of Science and Technology, Chinese Academy of Medical Sciences, National Natural Science Foundation of China, and Beijing Municipal Science and Technology Commission.
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            Lymphopenia predicts disease severity of COVID-19: a descriptive and predictive study

            Dear Editor, An outbreak of an unknown infectious pneumonia has recently occurred in Wuhan, China. 1 The pathogen of the disease was quickly identified as a novel coronavirus (SARS-CoV-2, severe acute respiratory syndrome coronavirus 2), and the disease was named coronavirus disease-19 (COVID-19). 2 The virus has so far caused 78,959 confirmed cases and 2791 deaths in China according to the reports of government. COVID-19 has been spreading in many countries such as Japan, Korea, Singapore, Iran, and Italia. The clinical manifestation of COVID-19 include fever, cough, fatigue, muscle pain, diarrhea, and pneumonia, which can develop to acute respiratory distress syndrome, metabolic acidosis, septic shock, coagulation dysfunction, and organ failure such as liver, kidney, and heart failure. 1,3,4 Unfortunately, there is no effective medication other than comprehensive support. However, the mild type of COVID-19 patients can recover shortly after appropriate clinical intervention. The moderate type patients, especially the elderly or the ones with comorbidity, can worsen and became severe, indicating high mortality rate. 3,4 However, efficient indicators for the disease severity, therapeutic response and disease outcome have not been fully investigated. Once such indicators are present, reasonable medication and care can be inclined, which is believed to significantly reduce the mortality rate of severe patients. Routine examinations include complete blood count, coagulation profile, and serum biochemical test (including renal and liver function, creatine kinase, lactate dehydrogenase, and electrolytes). Complete blood count is the most available, efficient and economic examination. This study aims to retrospect and analyze the time-courses of complete blood count of cured and dead patients, in order to obtain key indicators of disease progression and outcome and to provide guidance for subsequent clinical practice. Low LYM% is a predictor of prognosis in COVID-19 patients We first randomly selected five death cases and monitored dynamic changes in blood tests for each patient from disease onset to death. Although course of disease in each patient was different, inter-day variations of most parameters studied are fairly constant among all five patients (Supplementary Fig. S1a–f). Among all parameters, blood lymphocyte percentage (LYM%) showed the most significant and consistent trend (Supplementary Fig. S1f), suggesting that this indicator might reflect the disease progression. To further confirm the relationship between blood LYM% and patient’s condition, we increased our sample size to 12 death cases (mean age: 76 years; average therapeutic time: 20 days) (Supplementary Table S1). Most cases showed that LYM% was reduced to lower than 5% within 2 weeks after disease onset (Supplementary Fig. S2a). We also randomly selected seven cases (mean age: 35 years, average therapeutic time: 35 days) with severe symptoms and treatment outcomes (Supplementary Table S2) and 11 cases (mean age: 49; average therapeutic time: 26 days) with moderate symptoms and treatment outcomes (Supplementary Table S3). LYM% of severe patients decreased initially and then increased to higher than 10% until discharged (Supplementary Fig. S2b). In contrast, LYM% of moderate patients fluctuated very little after disease onset and was higher than 20% when discharged (Supplementary Fig. S2c). These results suggest that lymphopenia is a predictor of prognosis in COVID-19 patients. Establishment of a Time-LYM% model from discharged COVID-19 patients By summarizing all the death and cured cases in our hospital to depict the time-LYM% curve (Fig. 1a), we established a Time-LYM% model (TLM) for disease classification and prognosis prediction (Fig. 1b). We defined TLM as follows: patients have varying LYM% after the onset of COVID-19. At the 1st time point (TLM-1) of 10–12 days after symptom onset, patients with LYM% > 20% are classified as moderate type and can recover quickly. Patients with LYM%  20% are in recovery; patients with 5%  20% at TLM-1 are classified as moderate type and the ones with LYM%  20% at TLM-2, those pre-severe patients are reclassified as moderate. If 5% < LYM% < 20% at TLM-2, the pre-severe patients are indeed typed as severe. If LYM% < 5% at TLM-2, those patients are suggested as critically ill. The moderate and severe types are curable, while the critically ill types need intensive care has a poor prognosis. c Ninety COVID-19 patients were currently hospitalized in light of the classification criteria of the New Coronavirus Pneumonia Diagnosis Program (5th edition): 55 patients with moderate type, 24 patients with severe type and 11 patients with critically ill type. At TLM-1, LYM% in 24 out of 55 moderate cases was lower than 20%; At TLM-2, LYM% in all 24 patients was above 5%, indicating that these patients would be curable. Regarding other 24 patients with severe symptoms, LYM% at TLM-1 was lower than 20% in 20 out of 24 cases. LYM% at TLM-2 in 6 cases was <5%, indicating a poor prognosis. In 11 out of 11 critically ill patients, LYM% at TLM-1 was lower than 20%. LYM% at TLM-2 in six cases was lower than 5%, suggesting a poor prognosis. d The consistency between Guideline and TLM-based disease classification in c was tested using kappa statistic. Kappa = 0.48; P < 0.005 Validation of TLM in disease classification in hospitalized COVID-19 patients To validate the reliability of TLM, 90 hospitalized COVID-19 patients typed by the latest classification guideline (5th edition) were redefined with TLM. LYM% in 24 out of 55 moderate cases was lower than 20% at TLM-1; LYM% of all these patients was above 5% at TLM-2, indicating that these patients would recover soon. LYM% at TLM-1 was lower than 20% in 20 out of 24 severe cases; LYM% at TLM-2 was <5% in six cases, indicating a poor prognosis. LYM% at TLM-1 in 11 out of 11 critically ill patients was lower than 20%; LYM% of these patients at TLM-2 was lower than 5% in six cases, suggesting a poor outcome (Fig. 1c). Furthermore, with kappa statistic test, we verified the consistency between TLM and the existing guideline in disease typing (Fig. 1d). LYM% indicates disease severity of COVID-19 patients The classification of disease severity in COVID-19 is very important for the grading treatment of patients. In particular, when the outbreak of an epidemic occurs and medical resources are relatively scarce, it is necessary to conduct grading severity and treatment, thereby optimize the allocation of rescue resources and prevent the occurrence of overtreatment or undertreatment. According to the latest 5th edition of the national treatment guideline, COVID-19 can be classified into four types. Pulmonary imaging is the main basis of classification, and other auxiliary examinations are used to distinguish the severity. Blood tests are easy, fast, and cost-effective. However, none of the indicators in blood tests were included in the classification criteria. This study suggested that LYM% can be used as a reliable indicator to classify the moderate, severe, and critical ill types independent of any other auxiliary indicators. Analysis of possible reasons for lymphopenia in COVID-19 patients Lymphocytes play a decisive role in maintaining immune homeostasis and inflammatory response throughout the body. Understanding the mechanism of reduced blood lymphocyte levels is expected to provide an effective strategy for the treatment of COVID-19. We speculated four potential mechanisms leading to lymphocyte deficiency. (1) The virus might directly infect lymphocytes, resulting in lymphocyte death. Lymphocytes express the coronavirus receptor ACE2 and may be a direct target of viruses. 5 (2) The virus might directly destroy lymphatic organs. Acute lymphocyte decline might be related to lymphocytic dysfunction, and the direct damage of novel coronavirus virus to organs such as thymus and spleen cannot be ruled out. This hypothesis needs to be confirmed by pathological dissection in the future. (3) Inflammatory cytokines continued to be disordered, perhaps leading to lymphocyte apoptosis. Basic researches confirmed that tumour necrosis factor (TNF)α, interleukin (IL)-6, and other pro-inflammatory cytokines could induce lymphocyte deficiency. 6 (4) Inhibition of lymphocytes by metabolic molecules produced by metabolic disorders, such as hyperlactic acidemia. The severe type of COVID-19 patients had elevated blood lactic acid levels, which might suppress the proliferation of lymphocytes. 7 Multiple mechanisms mentioned above or beyond might work together to cause lymphopenia, and further research is needed. In conclusion, lymphopenia is an effective and reliable indicator of the severity and hospitalization in COVID-19 patients. We suggest that TLM should be included in the diagnosis and therapeutic guidelines of COVID-19. Supplementary information Supplementary information
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              Cleavage of the death domain kinase RIP by caspase-8 prompts TNF-induced apoptosis.

              Although the molecular mechanisms of TNF signaling have been largely elucidated, the principle that regulates the balance of life and death is still unknown. We report here that the death domain kinase RIP, a key component of the TNF signaling complex, was cleaved by Caspase-8 in TNF-induced apoptosis. The cleavage site was mapped to the aspartic acid at position 324 of RIP. We demonstrated that the cleavage of RIP resulted in the blockage of TNF-induced NF-kappaB activation. RIPc, one of the cleavage products, enhanced interaction between TRADD and FADD/MORT1 and increased cells' sensitivity to TNF. Most importantly, the Caspase-8 resistant RIP mutants protected cells against TNF-induced apopotosis. These results suggest that cleavage of RIP is an important process in TNF-induced apoptosis. Further more, RIP cleavage was also detected in other death receptor-mediated apoptosis. Therefore, our study provides a potential mechanism to convert cells from life to death in death receptor-mediated apoptosis.
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                Author and article information

                Contributors
                junying_yuan@hms.harvard.edu
                Journal
                Nat Rev Drug Discov
                Nat Rev Drug Discov
                Nature Reviews. Drug Discovery
                Nature Publishing Group UK (London )
                1474-1776
                1474-1784
                15 July 2020
                : 1-19
                Affiliations
                [1 ]ISNI 000000041936754X, GRID grid.38142.3c, Department of Cell Biology, , Harvard Medical School, ; Boston, MA USA
                [2 ]ISNI 0000 0000 8814 392X, GRID grid.417555.7, Rare and Neurologic Disease Research, Sanofi, ; Framingham, MA USA
                Author information
                http://orcid.org/0000-0003-1607-5851
                http://orcid.org/0000-0003-2405-6036
                Article
                71
                10.1038/s41573-020-0071-y
                7362612
                32669658
                18d758e8-4128-40ce-9979-016b1df66bb8
                © Springer Nature Limited 2020

                This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.

                History
                : 20 May 2020
                Categories
                Review Article

                chemical biology,drug discovery,diseases
                chemical biology, drug discovery, diseases

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