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      Alpha-synuclein regulates the repair of genomic DNA double-strand breaks in a DNA-PK cs-dependent manner

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          Abstract

          α-synuclein (αSyn) is a presynaptic and nuclear protein that aggregates in important neurodegenerative diseases such as Parkinson’s Disease (PD), Parkinson’s Disease Dementia (PDD) and Lewy Body Dementia (LBD). Our past work suggests that nuclear αSyn may regulate forms of DNA double-strand break (DSB) repair in HAP1 cells after DNA damage induction with the chemotherapeutic agent bleomycin 1 . Here, we report that genetic deletion of αSyn specifically impairs the non-homologous end-joining (NHEJ) pathway of DSB repair using an extrachromosomal plasmid-based repair assay in HAP1 cells. Importantly, induction of a single DSB at a precise genomic location using a CRISPR/Cas9 lentiviral approach also showed the importance of αSyn in regulating NHEJ in HAP1 cells and primary mouse cortical neuron cultures. This modulation of DSB repair is dependent on the activity of the DNA damage response signaling kinase DNA-PK cs, since the effect of αSyn loss-of-function is reversed by DNA-PK cs inhibition. Using in vivo multiphoton imaging in mouse cortex after induction of αSyn pathology, we find an increase in longitudinal cell survival of inclusion-bearing neurons after Polo-like kinase (PLK) inhibition, which is associated with an increase in the amount of aggregated αSyn within inclusions. Together, these findings suggest that αSyn plays an important physiologic role in regulating DSB repair in both a transformed cell line and in primary cortical neurons. Loss of this nuclear function may contribute to the neuronal genomic instability detected in PD, PDD and DLB and points to DNA-PK cs and PLK as potential therapeutic targets.

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          Most cited references73

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          alpha-Synuclein is phosphorylated in synucleinopathy lesions.

          The deposition of the abundant presynaptic brain protein alpha-synuclein as fibrillary aggregates in neurons or glial cells is a hallmark lesion in a subset of neurodegenerative disorders. These disorders include Parkinson's disease (PD), dementia with Lewy bodies (DLB) and multiple system atrophy, collectively referred to as synucleinopathies. Importantly, the identification of missense mutations in the alpha-synuclein gene in some pedigrees of familial PD has strongly implicated alpha-synuclein in the pathogenesis of PD and other synucleinopathies. However, specific post-translational modifications that underlie the aggregation of alpha-synuclein in affected brains have not, as yet, been identified. Here, we show by mass spectrometry analysis and studies with an antibody that specifically recognizes phospho-Ser 129 of alpha-synuclein, that this residue is selectively and extensively phosphorylated in synucleinopathy lesions. Furthermore, phosphorylation of alpha-synuclein at Ser 129 promoted fibril formation in vitro. These results highlight the importance of phosphorylation of filamentous proteins in the pathogenesis of neurodegenerative disorders.
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            Non-homologous DNA end joining and alternative pathways to double-strand break repair

            In mammalian cells, DNA double-strand breaks (DSBs) are repaired predominantly by the non-homologous end joining (NHEJ) pathway, which includes subpathways that can repair different DNA-end configurations. Furthermore, the repair of some DNA-end configurations can be shunted to the auxiliary pathways of alternative end joining (a-EJ) or single-strand annealing (SSA).
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              Comparison of nonhomologous end joining and homologous recombination in human cells.

              The two major pathways for repair of DNA double-strand breaks (DSBs) are homologous recombination (HR) and nonhomologous end joining (NHEJ). HR leads to accurate repair, while NHEJ is intrinsically mutagenic. To understand human somatic mutation it is essential to know the relationship between these pathways in human cells. Here we provide a comparison of the kinetics and relative contributions of HR and NHEJ in normal human cells. We used chromosomally integrated fluorescent reporter substrates for real-time in vivo monitoring of the NHEJ and HR. By examining multiple integrated clones we show that the efficiency of NHEJ and HR is strongly influenced by chromosomal location. Furthermore, we show that NHEJ of compatible ends (NHEJ-C) and NHEJ of incompatible ends (NHEJ-I) are fast processes, which can be completed in approximately 30 min, while HR is much slower and takes 7h or longer to complete. In actively cycling cells NHEJ-C is twice as efficient as NHEJ-I, and NHEJ-I is three times more efficient than HR. Our results suggest that NHEJ is a faster and more efficient DSB repair pathway than HR.
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                Author and article information

                Journal
                bioRxiv
                BIORXIV
                bioRxiv
                Cold Spring Harbor Laboratory
                04 March 2024
                : 2024.02.29.582819
                Affiliations
                [1 ]Jungers Center for Neurosciences Research, Oregon Health & Science University, Portland, OR 97239;
                [2 ]Neuroscience Graduate Program, Vollum Institute, Oregon Health & Science University, Portland, OR 97239;
                [3 ]Departments of Biology and Medicine, University of Rochester, Rochester, NY, 14620;
                [4 ]OHSU Parkinson Center, Department of Neurology, Oregon Health & Science University, Portland, OR 97239
                Author notes

                Author Contributions

                Conceptualization, EPR & VKU. Methodology, EPR, VRO, VG, VKU. Formal analysis, EPR, VRO, JSB, VKU. Investigation, EPR, VRO, VKU. Writing - original draft, EPR. Writing - review & editing, EPR, VRO, VG, VKU, Visualization - EPR & VKU. Supervision, VKU. Project administration, VKU. Funding acquisition, EPR & VKU.

                Corresponding author: Vivek K. Unni, unni@ 123456ohsu.edu , 3181 SW Sam Jackson Park Rd, Mail Code L623, Portland OR 97239
                Author information
                http://orcid.org/0000-0003-3999-0526
                http://orcid.org/0000-0002-7283-697X
                http://orcid.org/0009-0009-7121-4667
                http://orcid.org/0000-0001-8979-0333
                http://orcid.org/0000-0001-8833-6542
                Article
                10.1101/2024.02.29.582819
                10942394
                38496612
                246c8489-634e-4ff2-8fc5-c01c058c2caa

                This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.

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                Article

                α-synuclein,lewy body disease,parkinson’s disease,dna double-strand break repair,dna-pkcs,polo like kinase,synucleinopathy

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