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      DNA Entry into and Exit out of the Cohesin Ring by an Interlocking Gate Mechanism

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      1 , 2 , , 1 , ∗∗
      Cell
      Cell Press

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          Summary

          Structural maintenance of chromosome (SMC) complexes are proteinaceous rings that embrace DNA to enable vital chromosomal functions. The ring is formed by two SMC subunits, closed at a pair of ATPase heads, whose interaction is reinforced by a kleisin subunit. Using biochemical analysis of fission-yeast cohesin, we find that a similar series of events facilitates both topological entrapment and release of DNA. DNA-sensing lysines trigger ATP hydrolysis to open the SMC head interface, whereas the Wapl subunit disengages kleisin, but only after ATP rebinds. This suggests an interlocking gate mechanism for DNA transport both into and out of the cohesin ring. The entry direction is facilitated by a cohesin loader that appears to fold cohesin to expose the DNA sensor. Our results provide a model for dynamic DNA binding by all members of the SMC family and explain how lysine acetylation of cohesin establishes enduring sister chromatid cohesion.

          Graphical Abstract

          Highlights

          • Biochemical reconstitution of DNA entry into and exit out of the cohesin ring

          • DNA-sensing lysines on the Psm3/Smc3 subunit’s ATPase trigger main ring opening

          • The Wapl subunit disengages an interlocking kleisin subunit “outer gate”

          • A unified model for DNA entry and exit with implications for all SMC complexes

          Abstract

          The biochemical reconstitution of the topological entrapment and release of DNA by the fission-yeast cohesin complex indicates that DNA sensing by lysine residues triggers entry into and exit from nested gates comprised of the cohesin complex proteins in a manner that can be regulated by acetylation.

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          Most cited references51

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          Cohesin's binding to chromosomes depends on a separate complex consisting of Scc2 and Scc4 proteins.

          Cohesion between sister chromatids depends on a multisubunit cohesin complex that binds to chromosomes around DNA replication and dissociates from them at the onset of anaphase. Scc2p, though not a cohesin subunit, is also required for sister chromatid cohesion. We show here that Scc2p forms a complex with a novel protein, Scc4p, which is also necessary for sister cohesion. In scc2 or scc4 mutants, cohesin complexes form normally but fail to bind both to centromeres and to chromosome arms. Our data suggest that a major role for the Scc2p/Scc4p complex is to facilitate the loading of cohesin complexes onto chromosomes.
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            Wapl controls the dynamic association of cohesin with chromatin.

            Cohesin establishes sister-chromatid cohesion from S phase until mitosis or meiosis. To allow chromosome segregation, cohesion has to be dissolved. In vertebrate cells, this process is mediated in part by the protease separase, which destroys a small amount of cohesin, but most cohesin is removed from chromosomes without proteolysis. How this is achieved is poorly understood. Here, we show that the interaction between cohesin and chromatin is controlled by Wapl, a protein implicated in heterochromatin formation and tumorigenesis. Wapl is associated with cohesin throughout the cell cycle, and its depletion blocks cohesin dissociation from chromosomes during the early stages of mitosis and prevents the resolution of sister chromatids until anaphase, which occurs after a delay. Wapl depletion also increases the residence time of cohesin on chromatin in interphase. Our data indicate that Wapl is required to unlock cohesin from a particular state in which it is stably bound to chromatin.
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              Eco1-dependent cohesin acetylation during establishment of sister chromatid cohesion.

              Replicated chromosomes are held together by the chromosomal cohesin complex from the time of their synthesis in S phase onward. This requires the replication fork-associated acetyl transferase Eco1, but Eco1's mechanism of action is not known. We identified spontaneous suppressors of the thermosensitive eco1-1 allele in budding yeast. An acetylation-mimicking mutation of a conserved lysine in cohesin's Smc3 subunit makes Eco1 dispensable for cell growth, and we show that Smc3 is acetylated in an Eco1-dependent manner during DNA replication to promote sister chromatid cohesion. A second set of eco1-1 suppressors inactivate the budding yeast ortholog of the cohesin destabilizer Wapl. Our results indicate that Eco1 modifies cohesin to stabilize sister chromatid cohesion in parallel with a cohesion establishment reaction that is in principle Eco1-independent.
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                Author and article information

                Contributors
                Journal
                Cell
                Cell
                Cell
                Cell Press
                0092-8674
                1097-4172
                17 December 2015
                17 December 2015
                : 163
                : 7
                : 1628-1640
                Affiliations
                [1 ]The Francis Crick Institute, Lincoln’s Inn Fields Laboratory, London WC2A 3LY, UK
                Author notes
                []Corresponding author ymurayama@ 123456bio.titech.ac.jp
                [∗∗ ]Corresponding author frank.uhlmann@ 123456crick.ac.uk
                [2]

                Present address: Tokyo Institute of Technology, Tokyo 152-8550, Japan

                Article
                S0092-8674(15)01549-4
                10.1016/j.cell.2015.11.030
                4701713
                26687354
                24cafc56-2c47-4d0f-8043-7d6e8347740f
                © 2015 The Authors

                This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

                History
                : 15 July 2015
                : 25 September 2015
                : 4 November 2015
                Categories
                Article

                Cell biology
                Cell biology

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