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      Inhibiting the integrated stress response pathway prevents aberrant chondrocyte differentiation thereby alleviating chondrodysplasia

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          Abstract

          The integrated stress response (ISR) is activated by diverse forms of cellular stress, including endoplasmic reticulum (ER) stress, and is associated with diseases. However, the molecular mechanism(s) whereby the ISR impacts on differentiation is incompletely understood. Here, we exploited a mouse model of Metaphyseal Chondrodysplasia type Schmid (MCDS) to provide insight into the impact of the ISR on cell fate. We show the protein kinase RNA-like ER kinase (PERK) pathway that mediates preferential synthesis of ATF4 and CHOP, dominates in causing dysplasia by reverting chondrocyte differentiation via ATF4-directed transactivation of Sox9. Chondrocyte survival is enabled, cell autonomously, by CHOP and dual CHOP-ATF4 transactivation of Fgf21. Treatment of mutant mice with a chemical inhibitor of PERK signaling prevents the differentiation defects and ameliorates chondrodysplasia. By preventing aberrant differentiation, titrated inhibition of the ISR emerges as a rationale therapeutic strategy for stress-induced skeletal disorders.

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          Gene Ontology: tool for the unification of biology

          Genomic sequencing has made it clear that a large fraction of the genes specifying the core biological functions are shared by all eukaryotes. Knowledge of the biological role of such shared proteins in one organism can often be transferred to other organisms. The goal of the Gene Ontology Consortium is to produce a dynamic, controlled vocabulary that can be applied to all eukaryotes even as knowledge of gene and protein roles in cells is accumulating and changing. To this end, three independent ontologies accessible on the World-Wide Web (http://www.geneontology.org) are being constructed: biological process, molecular function and cellular component.
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            DAVID: Database for Annotation, Visualization, and Integrated Discovery.

            Functional annotation of differentially expressed genes is a necessary and critical step in the analysis of microarray data. The distributed nature of biological knowledge frequently requires researchers to navigate through numerous web-accessible databases gathering information one gene at a time. A more judicious approach is to provide query-based access to an integrated database that disseminates biologically rich information across large datasets and displays graphic summaries of functional information. Database for Annotation, Visualization, and Integrated Discovery (DAVID; http://www.david.niaid.nih.gov) addresses this need via four web-based analysis modules: 1) Annotation Tool - rapidly appends descriptive data from several public databases to lists of genes; 2) GoCharts - assigns genes to Gene Ontology functional categories based on user selected classifications and term specificity level; 3) KeggCharts - assigns genes to KEGG metabolic processes and enables users to view genes in the context of biochemical pathway maps; and 4) DomainCharts - groups genes according to PFAM conserved protein domains. Analysis results and graphical displays remain dynamically linked to primary data and external data repositories, thereby furnishing in-depth as well as broad-based data coverage. The functionality provided by DAVID accelerates the analysis of genome-scale datasets by facilitating the transition from data collection to biological meaning.
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              The integrated stress response.

              In response to diverse stress stimuli, eukaryotic cells activate a common adaptive pathway, termed the integrated stress response (ISR), to restore cellular homeostasis. The core event in this pathway is the phosphorylation of eukaryotic translation initiation factor 2 alpha (eIF2α) by one of four members of the eIF2α kinase family, which leads to a decrease in global protein synthesis and the induction of selected genes, including the transcription factor ATF4, that together promote cellular recovery. The gene expression program activated by the ISR optimizes the cellular response to stress and is dependent on the cellular context, as well as on the nature and intensity of the stress stimuli. Although the ISR is primarily a pro-survival, homeostatic program, exposure to severe stress can drive signaling toward cell death. Here, we review current understanding of the ISR signaling and how it regulates cell fate under diverse types of stress.
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                Author and article information

                Contributors
                Role: Reviewing Editor
                Journal
                eLife
                Elife
                eLife
                eLife
                eLife Sciences Publications, Ltd
                2050-084X
                19 July 2018
                2018
                : 7
                : e37673
                Affiliations
                [1 ]deptSchool of Biomedical Sciences University of Hong Kong Hong KongChina
                [2 ]deptGraduate School of Pharmaceutical Sciences University of Kyoto KyotoJapan
                [3 ]deptDepartment of Biological Sciences, Center for Systems Biology The University of Texas at Dallas RichardsonUnited States
                [4 ]deptMOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology Tsinghua University BeijingChina
                [5]Maine Medical Center Research Institute United States
                [6]Maine Medical Center Research Institute United States
                Author notes
                [†]

                These authors contributed equally to this work.

                Author information
                https://orcid.org/0000-0003-2295-5169
                http://orcid.org/0000-0003-2381-2805
                http://orcid.org/0000-0002-7408-1830
                http://orcid.org/0000-0003-3824-5778
                http://orcid.org/0000-0003-0802-8799
                Article
                37673
                10.7554/eLife.37673
                6053305
                30024379
                32416627-7c23-451b-81d8-70efeda6aab3
                © 2018, Wang et al

                This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.

                History
                : 18 April 2018
                : 05 July 2018
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100002920, Research Grants Council, University Grants Committee;
                Award ID: AoE/M-04/04
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100002920, Research Grants Council, University Grants Committee;
                Award ID: T12-708/12-N
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100002920, Research Grants Council, University Grants Committee;
                Award ID: N_HKU703/13
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100001809, National Natural Science Foundation of China;
                Award ID: 31361163004
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100002920, Research Grants Council, University Grants Committee;
                Award ID: HKU 760411M
                Award Recipient :
                The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
                Categories
                Research Article
                Developmental Biology
                Custom metadata
                Integrated stress response-induced expression of ATF4 and its transactivation of SOX9 causes aberrant chondrocyte differentiation and skeletal defects which can be alleviated by modulating initiation-factor eIF2α phosphorylation translation control.

                Life sciences
                endoplasmic reticulum stress,integrated stress response,chondrodysplasia,protein kinase rna-like er kinase pathway,atf4,isrib,mouse

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