For Publishers
DiscoveryMetadataPeer reviewHostingPublishing
For Researchers
JoinPublishReviewCollect
Register
Blog
About
Search
Advanced search
My ScienceOpen
Search
For Publishers
For Researchers
Blog
About
25
views
4
references
 Top references
cited by
2
    
0 reviews
 Review
0
comments
 Comment
0
recommends
+1 Recommend
0 collections
    0
    shares
      331
      similar
       All similar
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Complete Genome Assembly of Staphylococcus epidermidis AmMS 205

      brief-report

      Read this article at

      ScienceOpenPublisherPMC
      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Staphylococcus epidermidis causes a large number of catheter-related sepsis infections annually in the United States. We present the 2.54-Mbp complete genome assembly of reference strain S. epidermidis AmMS 205, including a single 37.7-kbp plasmid. The annotated assembly is available in GenBank under accession numbers CP009046 and CP009047.

          Related collections

          Most cited references4

          • Record: found
          • Abstract: found
          • Article: not found

          Consed: a graphical tool for sequence finishing.

          D. Gordon, C Abajian, P. Green (1998)
          Sequencing of large clones or small genomes is generally done by the shotgun approach (Anderson et al. 1982). This has two phases: (1) a shotgun phase in which a number of reads are generated from random subclones and assembled into contigs, followed by (2) a directed, or finishing phase in which the assembly is inspected for correctness and for various kinds of data anomalies (such as contaminant reads, unremoved vector sequence, and chimeric or deleted reads), additional data are collected to close gaps and resolve low quality regions, and editing is performed to correct assembly or base-calling errors. Finishing is currently a bottleneck in large-scale sequencing efforts, and throughput gains will depend both on reducing the need for human intervention and making it as efficient as possible. We have developed a finishing tool, consed, which attempts to implement these principles. A distinguishing feature relative to other programs is the use of error probabilities from our programs phred and phrap as an objective criterion to guide the entire finishing process. More information is available at http:// www.genome.washington.edu/consed/consed. html.
          Article 0 comments Cited 804 times – based on 0 reviews     Review now
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Solexa Ltd.

            Simon Bennett (2004)
            Solexa Ltd is developing an integrated system, based on a breakthrough single molecule sequencing technology, to address a US$2 billion market that is expected to grow exponentially alongside and as a consequence of further technological enhancements. The system, software and consumables will initially be sold to research organizations, pharmaceutical companies and diagnostic companies that will sequence large regions of genomic DNA, including whole genomes, at costs several orders of magnitude below current levels. Solexa expects to launch its first product in 2006, and as it continues to make time and cost efficiencies, additional products will be launched into the expanding markets that will have broad applications in basic research through to healthcare management.
            Article 0 comments Cited 362 times – based on 0 reviews     Review now
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Staphylococcus epidermidis infections.

              Michael Otto, Cuong D Vuong (2002)
              The opportunistic human pathogen Staphylococcus epidermidis has become the most important cause of nosocomial infections in recent years. Its pathogenicity is mainly due to the ability to form biofilms on indwelling medical devices. In a biofilm, S. epidermidis is protected against attacks from the immune system and against antibiotic treatment, making S. epidermidis infections difficult to eradicate.
              Article 0 comments Cited 72 times – based on 0 reviews     Review now
                Bookmark
                All references

                Author and article information

                Journal
                Journal ID (nlm-ta): Genome Announc
                Journal ID (iso-abbrev): Genome Announc
                Journal ID (hwp): ga
                Journal ID (pmc): ga
                Journal ID (publisher-id): GA
                Title: Genome Announcements
                Publisher: American Society for Microbiology (1752 N St., N.W., Washington, DC )
                ISSN (Electronic): 2169-8287
                Publication date (Electronic): 6 November 2014
                Publication date Collection: Nov-Dec 2014
                Volume: 2
                Issue: 6
                Electronic Location Identifier: e01059-14
                Affiliations
                [a ]Los Alamos National Laboratory (LANL), Los Alamos, New Mexico, USA
                [b ]Diagnostic Systems Division (DSD), United States Army Medical Research Institute of Infectious Diseases (USAMRIID), Fort Detrick, Maryland, USA
                [c ]Naval Medical Research Center (NMRC)-Frederick, Fort Detrick, Maryland, USA
                [d ]Henry M. Jackson Foundation, Bethesda, Maryland, USA
                [e ]United States Army Edgewood Chemical Biological Center (ECBC), Aberdeen Proving Ground, Maryland, USA
                Author notes
                Address correspondence to S. L. Johnson, shannonj@ 123456lanl.gov .
                [*]

                Present address: M. B. Scholz, Michigan State University, East Lansing, Michigan, USA.

                Author information
                http://orcid.org/0000-0002-3972-9208
                Article
                Publisher ID: genomeA01059-14
                DOI: 10.1128/genomeA.01059-14
                PMC ID: 4223448
                PubMed ID: 25377697
                SO-VID: 35a6b15f-aa51-4d9c-b374-9868dfc5db59
                Copyright © Copyright © 2014 Davenport et al.
                License:

                This is an open-access article distributed under the terms of the Creative Commons Attribution 3.0 Unported license.

                History
                Date received : 8 September 2014
                Date accepted : 30 September 2014
                Page count
                Pages: 2
                Categories
                Subject: Prokaryotes
                Custom metadata
                cover-date November/December 2014
                access-type free

                ScienceOpen disciplines: Genetics
                Data availability:
                ScienceOpen disciplines: Genetics

                Comments

                Comment on this article

                scite_

                Similar content331

                See all similar

                Cited by2

                See all cited by

                Most referenced authors498

                See all reference authors