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      Multiscale effects of excitatory-inhibitory homeostasis in lesioned cortical networks: A computational study

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          Abstract

          Stroke-related disruptions in functional connectivity (FC) often spread beyond lesioned areas and, given the localized nature of lesions, it is unclear how the recovery of FC is orchestrated on a global scale. Since recovery is accompanied by long-term changes in excitability, we propose excitatory-inhibitory (E-I) homeostasis as a driving mechanism. We present a large-scale model of the neocortex, with synaptic scaling of local inhibition, showing how E-I homeostasis can drive the post-lesion restoration of FC and linking it to changes in excitability. We show that functional networks could reorganize to recover disrupted modularity and small-worldness, but not network dynamics, suggesting the need to consider forms of plasticity beyond synaptic scaling of inhibition. On average, we observed widespread increases in excitability, with the emergence of complex lesion-dependent patterns related to biomarkers of relevant side effects of stroke, such as epilepsy, depression and chronic pain. In summary, our results show that the effects of E-I homeostasis extend beyond local E-I balance, driving the restoration of global properties of FC, and relating to post-stroke symptomatology. Therefore, we suggest the framework of E-I homeostasis as a relevant theoretical foundation for the study of stroke recovery and for understanding the emergence of meaningful features of FC from local dynamics.

          Author summary

          Excitatory-inhibitory (E-I) balance is an essential feature of cortical network function and is known to be maintained locally by homeostatic plasticity. In this work, we explore how the effects of such balancing mechanisms extend beyond the mesoscale and contribute to the maintenance of relevant macroscale properties of functional connectivity. More specifically, we suggest local E-I homeostasis is tied to the reorganization of large-scale functional networks following a focal lesion, providing an explanation for the recovery of relevant functional properties at a global level. To that end, we built a network model of interacting neural masses, constrained by the human connectome and accounting for local homeostasis of E-I balance. We show that this mechanism drives the recovery of properties such as modularity and small-worldness after simulated lesions and that the resultant patterns of change in excitability can be related to known late-onset symptoms of stroke such as seizures, depression, and chronic pain, in a lesion-dependent manner. Therefore, we propose E-I homeostasis as a relevant driver of recovery in lesioned networks and a contributing factor to the etiology of specific side effects of stroke, emerging as a byproduct of lesion-dependent changes in local excitability.

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          Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain.

          An anatomical parcellation of the spatially normalized single-subject high-resolution T1 volume provided by the Montreal Neurological Institute (MNI) (D. L. Collins et al., 1998, Trans. Med. Imag. 17, 463-468) was performed. The MNI single-subject main sulci were first delineated and further used as landmarks for the 3D definition of 45 anatomical volumes of interest (AVOI) in each hemisphere. This procedure was performed using a dedicated software which allowed a 3D following of the sulci course on the edited brain. Regions of interest were then drawn manually with the same software every 2 mm on the axial slices of the high-resolution MNI single subject. The 90 AVOI were reconstructed and assigned a label. Using this parcellation method, three procedures to perform the automated anatomical labeling of functional studies are proposed: (1) labeling of an extremum defined by a set of coordinates, (2) percentage of voxels belonging to each of the AVOI intersected by a sphere centered by a set of coordinates, and (3) percentage of voxels belonging to each of the AVOI intersected by an activated cluster. An interface with the Statistical Parametric Mapping package (SPM, J. Ashburner and K. J. Friston, 1999, Hum. Brain Mapp. 7, 254-266) is provided as a freeware to researchers of the neuroimaging community. We believe that this tool is an improvement for the macroscopical labeling of activated area compared to labeling assessed using the Talairach atlas brain in which deformations are well known. However, this tool does not alleviate the need for more sophisticated labeling strategies based on anatomical or cytoarchitectonic probabilistic maps.
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            The organization of the human cerebral cortex estimated by intrinsic functional connectivity.

            Information processing in the cerebral cortex involves interactions among distributed areas. Anatomical connectivity suggests that certain areas form local hierarchical relations such as within the visual system. Other connectivity patterns, particularly among association areas, suggest the presence of large-scale circuits without clear hierarchical relations. In this study the organization of networks in the human cerebrum was explored using resting-state functional connectivity MRI. Data from 1,000 subjects were registered using surface-based alignment. A clustering approach was employed to identify and replicate networks of functionally coupled regions across the cerebral cortex. The results revealed local networks confined to sensory and motor cortices as well as distributed networks of association regions. Within the sensory and motor cortices, functional connectivity followed topographic representations across adjacent areas. In association cortex, the connectivity patterns often showed abrupt transitions between network boundaries. Focused analyses were performed to better understand properties of network connectivity. A canonical sensory-motor pathway involving primary visual area, putative middle temporal area complex (MT+), lateral intraparietal area, and frontal eye field was analyzed to explore how interactions might arise within and between networks. Results showed that adjacent regions of the MT+ complex demonstrate differential connectivity consistent with a hierarchical pathway that spans networks. The functional connectivity of parietal and prefrontal association cortices was next explored. Distinct connectivity profiles of neighboring regions suggest they participate in distributed networks that, while showing evidence for interactions, are embedded within largely parallel, interdigitated circuits. We conclude by discussing the organization of these large-scale cerebral networks in relation to monkey anatomy and their potential evolutionary expansion in humans to support cognition.
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              A fast diffeomorphic image registration algorithm.

              This paper describes DARTEL, which is an algorithm for diffeomorphic image registration. It is implemented for both 2D and 3D image registration and has been formulated to include an option for estimating inverse consistent deformations. Nonlinear registration is considered as a local optimisation problem, which is solved using a Levenberg-Marquardt strategy. The necessary matrix solutions are obtained in reasonable time using a multigrid method. A constant Eulerian velocity framework is used, which allows a rapid scaling and squaring method to be used in the computations. DARTEL has been applied to intersubject registration of 471 whole brain images, and the resulting deformations were evaluated in terms of how well they encode the shape information necessary to separate male and female subjects and to predict the ages of the subjects.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Formal analysisRole: MethodologyRole: SoftwareRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Formal analysisRole: MethodologyRole: Writing – review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: SupervisionRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS Comput Biol
                PLoS Comput Biol
                plos
                PLOS Computational Biology
                Public Library of Science (San Francisco, CA USA )
                1553-734X
                1553-7358
                7 July 2023
                July 2023
                : 19
                : 7
                : e1011279
                Affiliations
                [1 ] Eodyne Systems SL, Barcelona, Spain
                [2 ] Department of Information and Communication Technologies, Universitat Pompeu Fabra (UPF), Barcelona, Spain
                [3 ] Centre for Brain and Cognition, Computational Neuroscience Group, Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona, Spain
                [4 ] Centre for Eudaimonia and Human Flourishing, Linacre College, University of Oxford, United Kingdom
                [5 ] Donders Institute for Brain, Cognition and Behavior, Radboud University, Nijmegen, The Netherlands
                University of Oxford, UNITED KINGDOM
                Author notes

                I have read the journal’s policy and the authors of this manuscript have the following competing interests: FPS is employed by the company Eodyne Systems SL. PFMJV is founder and shareholder of Eodyne Systems S.L., which aims at bringing scientifically validated neurorehabilitation and education technology to society

                Author information
                https://orcid.org/0000-0002-3199-4365
                Article
                PCOMPBIOL-D-22-01745
                10.1371/journal.pcbi.1011279
                10355437
                37418506
                3671cc89-3158-41ae-b5c5-5885b9577815
                © 2023 Páscoa dos Santos et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 29 November 2022
                : 18 June 2023
                Page count
                Figures: 6, Tables: 1, Pages: 39
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/100010661, Horizon 2020 Framework Programme;
                Award ID: 860563
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100010661, Horizon 2020 Framework Programme;
                Award ID: 101017716
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100010661, Horizon 2020 Framework Programme;
                Award ID: 826421
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100018693, HORIZON EUROPE Framework Programme;
                Award ID: 101057655
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100014419, EIT Health;
                Award ID: 19277
                Award Recipient :
                FPS is supported by the European Commission through the euSNN project (MSCA-ITN ETN H2020—ID 860563). JV is supported by EU H2020 FET Proactive project Neurotwin (ID no. 101017716). PFMJV is supported by Virtual Brain Cloud (H2020 ID 826421), AISN (HE, 101057655), RGS@HOME (EIT Health—ID 19277) and PHRASE (EIC, 101058240). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Physiology
                Physiological Processes
                Homeostasis
                Medicine and Health Sciences
                Medical Conditions
                Cerebrovascular Diseases
                Stroke
                Medicine and Health Sciences
                Neurology
                Cerebrovascular Diseases
                Stroke
                Medicine and Health Sciences
                Vascular Medicine
                Stroke
                Medicine and Health Sciences
                Clinical Medicine
                Signs and Symptoms
                Lesions
                Computer and Information Sciences
                Data Management
                Data Visualization
                Infographics
                Graphs
                Biology and Life Sciences
                Anatomy
                Brain
                Motor Cortex
                Medicine and Health Sciences
                Anatomy
                Brain
                Motor Cortex
                Medicine and Health Sciences
                Mental Health and Psychiatry
                Mood Disorders
                Depression
                Medicine and Health Sciences
                Oncology
                Metastasis
                Medicine and Health Sciences
                Oncology
                Basic Cancer Research
                Metastasis
                Biology and Life Sciences
                Neuroscience
                Cellular Neuroscience
                Synaptic Plasticity
                Biology and Life Sciences
                Neuroscience
                Developmental Neuroscience
                Synaptic Plasticity
                Custom metadata
                vor-update-to-uncorrected-proof
                2023-07-19
                The code necessary to run the model developed for this work and to perform all the relevant analysis is available at: https://gitlab.com/francpsantos/stroke-e-i-homeostasis.

                Quantitative & Systems biology
                Quantitative & Systems biology

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