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      The multi‐scale architecture of mammalian sperm flagella and implications for ciliary motility

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          Abstract

          Motile cilia are molecular machines used by a myriad of eukaryotic cells to swim through fluid environments. However, available molecular structures represent only a handful of cell types, limiting our understanding of how cilia are modified to support motility in diverse media. Here, we use cryo‐focused ion beam milling‐enabled cryo‐electron tomography to image sperm flagella from three mammalian species. We resolve in‐cell structures of centrioles, axonemal doublets, central pair apparatus, and endpiece singlets, revealing novel protofilament‐bridging microtubule inner proteins throughout the flagellum. We present native structures of the flagellar base, which is crucial for shaping the flagellar beat. We show that outer dense fibers are directly coupled to microtubule doublets in the principal piece but not in the midpiece. Thus, mammalian sperm flagella are ornamented across scales, from protofilament‐bracing structures reinforcing microtubules at the nano‐scale to accessory structures that impose micron‐scale asymmetries on the entire assembly. Our structures provide vital foundations for linking molecular structure to ciliary motility and evolution.

          Abstract

          In situ cryo‐electron tomography uncovers structural specialisations of sperm flagella in several mammalian species.

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          Most cited references78

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          UCSF Chimera--a visualization system for exploratory research and analysis.

          The design, implementation, and capabilities of an extensible visualization system, UCSF Chimera, are discussed. Chimera is segmented into a core that provides basic services and visualization, and extensions that provide most higher level functionality. This architecture ensures that the extension mechanism satisfies the demands of outside developers who wish to incorporate new features. Two unusual extensions are presented: Multiscale, which adds the ability to visualize large-scale molecular assemblies such as viral coats, and Collaboratory, which allows researchers to share a Chimera session interactively despite being at separate locales. Other extensions include Multalign Viewer, for showing multiple sequence alignments and associated structures; ViewDock, for screening docked ligand orientations; Movie, for replaying molecular dynamics trajectories; and Volume Viewer, for display and analysis of volumetric data. A discussion of the usage of Chimera in real-world situations is given, along with anticipated future directions. Chimera includes full user documentation, is free to academic and nonprofit users, and is available for Microsoft Windows, Linux, Apple Mac OS X, SGI IRIX, and HP Tru64 Unix from http://www.cgl.ucsf.edu/chimera/. Copyright 2004 Wiley Periodicals, Inc.
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            MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

            MotionCor2 software corrects for beam-induced sample motion, improving the resolution of cryo-EM reconstructions.
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              Automated electron microscope tomography using robust prediction of specimen movements.

              A new method was developed to acquire images automatically at a series of specimen tilts, as required for tomographic reconstruction. The method uses changes in specimen position at previous tilt angles to predict the position at the current tilt angle. Actual measurement of the position or focus is skipped if the statistical error of the prediction is low enough. This method allows a tilt series to be acquired rapidly when conditions are good but falls back toward the traditional approach of taking focusing and tracking images when necessary. The method has been implemented in a program, SerialEM, that provides an efficient environment for data acquisition. This program includes control of an energy filter as well as a low-dose imaging mode, in which tracking and focusing occur away from the area of interest. The program can automatically acquire a montage of overlapping frames, allowing tomography of areas larger than the field of the CCD camera. It also includes tools for navigating between specimen positions and finding regions of interest.
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                Author and article information

                Contributors
                z.zeev@uu.nl
                Journal
                EMBO J
                EMBO J
                10.1002/(ISSN)1460-2075
                EMBJ
                embojnl
                The EMBO Journal
                John Wiley and Sons Inc. (Hoboken )
                0261-4189
                1460-2075
                10 March 2021
                01 April 2021
                10 March 2021
                : 40
                : 7 ( doiID: 10.1002/embj.v40.7 )
                : e107410
                Affiliations
                [ 1 ] Cryo‐Electron Microscopy Bijvoet Center for Biomolecular Research Utrecht University Utrecht The Netherlands
                [ 2 ] The Division of Structural Biology Wellcome Centre for Human Genetics The University of Oxford Oxford UK
                [ 3 ] Department of Equine Sciences Faculty of Veterinary Medicine Utrecht University Utrecht The Netherlands
                [ 4 ] Veterinary Department Universidade Federal de Viçosa Viçosa Brazil
                [ 5 ] Department of Farm & Animal Health and Biomolecular Health Sciences Faculty of Veterinary Medicine Utrecht University Utrecht The Netherlands
                [ 6 ] Priority Research Centre for Reproductive Science Faculty of Science The University of Newcastle Callaghan NSW Australia
                [ 7 ] Department of Engineering Mathematics University of Bristol Bristol UK
                Author notes
                [*] [* ] Corresponding author. Tel: +31 30 253 3178; E‐mail: z.zeev@ 123456uu.nl

                Author information
                https://orcid.org/0000-0002-3348-1096
                https://orcid.org/0000-0002-2342-3474
                https://orcid.org/0000-0002-0360-4307
                https://orcid.org/0000-0001-6677-9609
                https://orcid.org/0000-0003-4064-7792
                https://orcid.org/0000-0001-7256-1403
                https://orcid.org/0000-0001-6129-1882
                https://orcid.org/0000-0001-8053-9249
                https://orcid.org/0000-0002-2571-550X
                Article
                EMBJ2020107410
                10.15252/embj.2020107410
                8013824
                33694216
                3e569c52-b501-4ac6-8046-9fff1b934b37
                © 2021 The Authors. Published under the terms of the CC BY NC ND 4.0 license

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 27 January 2021
                : 27 November 2020
                : 12 February 2021
                Page count
                Figures: 12, Tables: 1, Pages: 17, Words: 24405
                Funding
                Funded by: Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) , open-funder-registry 10.13039/501100003246;
                Award ID: 740.018.007
                Categories
                Article
                Articles
                Custom metadata
                2.0
                01 April 2021
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.0.1 mode:remove_FC converted:01.04.2021

                Molecular biology
                centrioles,cryo‐electron tomography,cryo‐fib milling,motile cilia,sperm,cell adhesion, polarity & cytoskeleton

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