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      Origin and Diversification of South American Polyploid Silene Sect. Physolychnis (Caryophyllaceae) in the Andes and Patagonia

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          Abstract

          The Andes are an important biogeographic region in South America extending for about 8000 km from Venezuela to Argentina. They are – along with the Patagonian steppes – the main distribution area of ca. 18 polyploid species of Silene sect. Physolychnis. Using nuclear ITS and plastid psbE- petG and matK sequences, flow cytometric ploidy level estimations and chromosome counts, and including 13 South American species, we explored the origin and diversification of this group. Our data suggest a single, late Pliocene or early Pleistocene migration of the North American S. verecunda lineage to South America, which was followed by dispersal and diversification of this tetraploid lineage in the Andes, other Argentinian mountain ranges and the Patagonian steppes. Later in the Pleistocene South American populations hybridized with the S. uralensis lineage, which led to allopolyploidisation and origin of decaploid S. chilensis and S. echegarayi occurring at high elevations. Additionally, we show that the morphological differentiation in leaf shape correlated with divergent habitats (high elevation Andes vs. lower elevation Patagonian steppes) is also supported phylogenetically, especially in the ITS tree. Lastly, the species boundaries among the narrow-leaved Patagonian steppe species are poorly resolved and need more thorough taxonomic revision.

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          Polyploidy and genome evolution in plants.

          Genome doubling (polyploidy) has been and continues to be a pervasive force in plant evolution. Modern plant genomes harbor evidence of multiple rounds of past polyploidization events, often followed by massive silencing and elimination of duplicated genes. Recent studies have refined our inferences of the number and timing of polyploidy events and the impact of these events on genome structure. Many polyploids experience extensive and rapid genomic alterations, some arising with the onset of polyploidy. Survivorship of duplicated genes are differential across gene classes, with some duplicate genes more prone to retention than others. Recent theory is now supported by evidence showing that genes that are retained in duplicate typically diversify in function or undergo subfunctionalization. Polyploidy has extensive effects on gene expression, with gene silencing accompanying polyploid formation and continuing over evolutionary time.
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            The Chromosome Counts Database (CCDB) - a community resource of plant chromosome numbers.

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              Effect of the formation of the Isthmus of Panama on Atlantic Ocean thermohaline circulation

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                Author and article information

                Contributors
                Journal
                Front Genet
                Front Genet
                Front. Genet.
                Frontiers in Genetics
                Frontiers Media S.A.
                1664-8021
                11 December 2018
                2018
                : 9
                : 639
                Affiliations
                [1] 1Department of Botany, University of Innsbruck , Innsbruck, Austria
                [2] 2Department of Botany and Biodiversity Research, University of Vienna , Vienna, Austria
                [3] 3Department of Plant and Environmental Sciences, University of Gothenburg , Gothenburg, Sweden
                Author notes

                Edited by: Jordi López-Pujol, Spanish National Research Council (CSIC), Spain

                Reviewed by: Alfredo Garcia-Fernández, Universidad Rey Juan Carlos, Spain; Wei Wu, Sun Yat-sen University, China; Mariana Andrea Grossi, Universidad Nacional de La Plata, Argentina

                *Correspondence: Božo Frajman, bozo.frajman@ 123456uibk.ac.at Hanna Weiss-Schneeweiss, hanna.schneeweiss@ 123456univie.ac.at

                This article was submitted to Evolutionary and Population Genetics, a section of the journal Frontiers in Genetics

                Article
                10.3389/fgene.2018.00639
                6297176
                475c7b19-4931-4a03-9903-455c115c71a7
                Copyright © 2018 Frajman, Schönswetter, Weiss-Schneeweiss and Oxelman.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 31 August 2018
                : 27 November 2018
                Page count
                Figures: 7, Tables: 0, Equations: 0, References: 75, Pages: 12, Words: 0
                Categories
                Genetics
                Original Research

                Genetics
                andes,chromosome counts,its,patagonia,phylogeny,relative genome size
                Genetics
                andes, chromosome counts, its, patagonia, phylogeny, relative genome size

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