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      Structure of anthrax lethal toxin prepore complex suggests a pathway for efficient cell entry

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          Abstract

          Anthrax toxin is a tripartite complex in which the protective antigen moiety forms a pore through which lethal factor and edema factor are translocated. Fabre et al. reveal a mechanism for efficient translocation in their structure of the heptameric protective antigen prepore bound to three lethal factors.

          Abstract

          Anthrax toxin comprises three soluble proteins: protective antigen (PA), lethal factor (LF), and edema factor (EF). PA must be cleaved by host proteases before it oligomerizes and forms a prepore, to which LF and EF bind. After endocytosis of this tripartite complex, the prepore transforms into a narrow transmembrane pore that delivers unfolded LF and EF into the host cytosol. Here, we find that translocation of multiple 90-kD LF molecules is rapid and efficient. To probe the molecular basis of this translocation, we calculated a three-dimensional map of the fully loaded (PA 63) 7–(LF) 3 prepore complex by cryo–electron microscopy (cryo-EM). The map shows three LFs bound in a similar way to one another, via their N-terminal domains, to the surface of the PA heptamer. The model also reveals contacts between the N- and C-terminal domains of adjacent LF molecules. We propose that this molecular arrangement plays an important role in the maintenance of translocation efficiency through the narrow PA pore.

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          Most cited references47

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          SPARX, a new environment for Cryo-EM image processing.

          SPARX (single particle analysis for resolution extension) is a new image processing environment with a particular emphasis on transmission electron microscopy (TEM) structure determination. It includes a graphical user interface that provides a complete graphical programming environment with a novel data/process-flow infrastructure, an extensive library of Python scripts that perform specific TEM-related computational tasks, and a core library of fundamental C++ image processing functions. In addition, SPARX relies on the EMAN2 library and cctbx, the open-source computational crystallography library from PHENIX. The design of the system is such that future inclusion of other image processing libraries is a straightforward task. The SPARX infrastructure intelligently handles retention of intermediate values, even those inside programming structures such as loops and function calls. SPARX and all dependencies are free for academic use and available with complete source.
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            Crystal structure of the anthrax toxin protective antigen.

            Protective antigen (PA) is the central component of the three-part protein toxin secreted by Bacillus anthracis, the organism responsible for anthrax. After proteolytic activation on the host cell surface, PA forms a membrane-inserting heptamer that translocates the toxic enzymes, oedema factor and lethal factor, into the cytosol. PA, which has a relative molecular mass of 83,000 (M(r) 83K), can also translocate heterologous proteins, and is being evaluated for use as a general protein delivery system. Here we report the crystal structure of monomeric PA at 2.1 A resolution and the water-soluble heptamer at 4.5 A resolution. The monomer is organized mainly into antiparallel beta-sheets and has four domains: an amino-terminal domain (domain 1) containing two calcium ions and the cleavage site for activating proteases; a heptamerization domain (domain 2) containing a large flexible loop implicated in membrane insertion; a small domain of unknown function (domain 3); and a carboxy-terminal receptor-binding domain (domain 4). Removal of a 20K amino-terminal fragment from domain 1 allows the assembly of the heptamer, a ring-shaped structure with a negatively charged lumen, and exposes a large hydrophobic surface for binding the toxic enzymes. We propose a model of pH-dependent membrane insertion involving the formation of a porin-like, membrane-spanning beta-barrel.
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              Image processing for electron microscopy single-particle analysis using XMIPP.

              We describe a collection of standardized image processing protocols for electron microscopy single-particle analysis using the XMIPP software package. These protocols allow performing the entire processing workflow starting from digitized micrographs up to the final refinement and evaluation of 3D models. A particular emphasis has been placed on the treatment of structurally heterogeneous data through maximum-likelihood refinements and self-organizing maps as well as the generation of initial 3D models for such data sets through random conical tilt reconstruction methods. All protocols presented have been implemented as stand-alone, executable python scripts, for which a dedicated graphical user interface has been developed. Thereby, they may provide novice users with a convenient tool to quickly obtain useful results with minimum efforts in learning about the details of this comprehensive package. Examples of applications are presented for a negative stain random conical tilt data set on the hexameric helicase G40P and for a structurally heterogeneous data set on 70S Escherichia coli ribosomes embedded in vitrified ice.
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                Author and article information

                Journal
                J Gen Physiol
                J. Gen. Physiol
                jgp
                jgp
                The Journal of General Physiology
                The Rockefeller University Press
                0022-1295
                1540-7748
                October 2016
                : 148
                : 4
                : 313-324
                Affiliations
                [1 ]Department of Anatomy and Cell Biology, McGill University, Montréal, Québec H3A 0C7, Canada
                [2 ]Groupe de Recherche Axé sur la Structure des Protéines (GRASP), Groupe d’Étude des Protéines Membranaires (GÉPROM), McGill University, Montréal, Québec H3A 0C7, Canada
                [3 ]Bioinformatics and Structural Biology Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037
                [4 ]Departments of Physics, Université de Montréal, Montréal, Québec H3T 1J4, Canada
                [5 ]Department of Physiology, Université de Montréal, Montréal, Québec H3T 1J4, Canada
                [6 ]Groupe d’Étude des Protéines Membranaires (GÉPROM), Université de Montréal, Montréal, Québec H3T 1J4, Canada
                Author notes
                Correspondence to Isabelle Rouiller: isabelle.rouiller@ 123456mcgill.ca ; or Robert Liddington: rlidding@ 123456sbpdiscovery.org
                [*]

                R. Liddington and I. Rouiller contributed equally to this paper.

                Author information
                http://orcid.org/0000-0002-0393-6280
                http://orcid.org/0000-0003-4484-2907
                Article
                201611617
                10.1085/jgp.201611617
                5037343
                27670897
                5eed5497-b32b-4bd5-80e6-7a027a71782f
                © 2016 Fabre et al.

                This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.rupress.org/terms). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 3.0 Unported license, as described at http://creativecommons.org/licenses/by-nc-sa/3.0/).

                History
                : 03 May 2016
                : 25 August 2016
                Funding
                Funded by: Canadian Foundation for Innovation http://dx.doi.org/10.13039/501100000196
                Award ID: 12824
                Funded by: Canadian Institutes for Health Research http://dx.doi.org/10.13039/501100000024
                Award ID: MOP 86693
                Funded by: Natural Sciences and Engineering Research Council of Canada http://dx.doi.org/10.13039/501100000038
                Award ID: DG-327201-2012
                Award ID: RGPIN-2014-04798
                Funded by: US Department of Defense http://dx.doi.org/10.13039/100000005
                Award ID: W81XWH-10-1-0093
                Funded by: National Institutes of Health http://dx.doi.org/10.13039/100000002
                Award ID: CA179087
                Funded by: CIHR http://dx.doi.org/10.13039/501100000024
                Categories
                Research Articles
                Research Article
                511
                501

                Anatomy & Physiology
                Anatomy & Physiology

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