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      A conserved clathrin‐coated vesicle component, OsSCYL2, regulates plant innate immunity in rice

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          Abstract

          Clathrin‐mediated vesicle trafficking (CMVT) is a fundamental process in all eukaryotic species, and indispensable to organism's growth and development. Recently, it has been suggested that CMVT also plays important roles in the regulation of plant immunity. However, the molecular link between CMVT and plant immunity is largely unknown. SCY1‐LIKE2 (SCYL2) is evolutionally conserved among the eukaryote species. Loss‐of‐function of SCYL2 in Arabidopsis led to severe growth defects. Here, we show that mutation of OsSCYL2 in rice gave rise to a novel phenotype—hypersensitive response‐like (HR) cell death in a light‐dependent manner. Although mutants of OsSCYL2 showed additional defects in the photosynthetic system, they exhibited enhanced resistance to bacterial pathogens. Subcellular localisation showed that OsSCYL2 localized at Golgi, trans‐Golgi network and prevacuolar compartment. OsSCYL2 interacted with OsSPL28, subunit of a clathrin‐associated adaptor protein that is known to regulate HR‐like cell death in rice. We further showed that OsSCYL2–OsSPL28 interaction is mediated by OsCHC1. Collectively, we characterized a novel component of the CMVT pathway in the regulation of plant immunity. Our work also revealed unidentified new functions of the very conserved SCYL2. It thus may provide new breeding targets to achieve both high yield and enhanced resistance in crops.

          Summary Statement

          This study shows that OsSCYL2, a eukaryotic conserved SCY1‐LIKE kinase, interacts with the medium subunit μ1 of clathrin‐coated adaptor protein complex 1 (OsSPL28) via clathrin heavy chain 1, and regulates plant immunity and cell death in rice. These results shed new insights into the clathrin‐mediated vesicle trafficking‐mediated signalling pathway in the regulation of plant immunity, and therefore may provide new breeding targets to achieve both high yield and enhanced resistance in crops.

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          Most cited references51

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          Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

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            Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

            In comparative high-throughput sequencing assays, a fundamental task is the analysis of count data, such as read counts per gene in RNA-seq, for evidence of systematic changes across experimental conditions. Small replicate numbers, discreteness, large dynamic range and the presence of outliers require a suitable statistical approach. We present DESeq2, a method for differential analysis of count data, using shrinkage estimation for dispersions and fold changes to improve stability and interpretability of estimates. This enables a more quantitative analysis focused on the strength rather than the mere presence of differential expression. The DESeq2 package is available at http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html. Electronic supplementary material The online version of this article (doi:10.1186/s13059-014-0550-8) contains supplementary material, which is available to authorized users.
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              Reactive oxygen species homeostasis and signalling during drought and salinity stresses.

              Water deficit and salinity, especially under high light intensity or in combination with other stresses, disrupt photosynthesis and increase photorespiration, altering the normal homeostasis of cells and cause an increased production of reactive oxygen species (ROS). ROS play a dual role in the response of plants to abiotic stresses functioning as toxic by-products of stress metabolism, as well as important signal transduction molecules. In this review, we provide an overview of ROS homeostasis and signalling in response to drought and salt stresses and discuss the current understanding of ROS involvement in stress sensing, stress signalling and regulation of acclimation responses.
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                Author and article information

                Contributors
                caoliming@saas.sh.cn
                chuhuangwei@saas.sh.cn
                Journal
                Plant Cell Environ
                Plant Cell Environ
                10.1111/(ISSN)1365-3040
                PCE
                Plant, Cell & Environment
                John Wiley and Sons Inc. (Hoboken )
                0140-7791
                1365-3040
                21 December 2021
                February 2022
                : 45
                : 2 ( doiID: 10.1111/pce.v45.2 )
                : 542-555
                Affiliations
                [ 1 ] Institute of Crop Breeding and Cultivation Shanghai Academy of Agricultural Sciences Shanghai China
                [ 2 ] College of Agronomy Jiangxi Agricultural University Nanchang Jiangxi China
                [ 3 ] Institute of Edible Fungi Shanghai Academy of Agricultural Sciences Shanghai China
                [ 4 ] College of Fisheries and Life Shanghai Ocean University Shanghai China
                [ 5 ] College of Life Science Shanghai Normal University Shanghai China
                [ 6 ] Cancer and Stem Cell Biology Programme Duke‐NUS Medical School Singapore Singapore
                [ 7 ] School of Agriculture and Biology, Joint Center for Single Cell Biology Shanghai Jiao Tong University Shanghai China
                Author notes
                [*] [* ] Correspondence Liming Cao and Huangwei Chu, Institute of Crop Breeding and Cultivation, Shanghai Academy of Agricultural Sciences, Shanghai 201403, China.

                Email:  caoliming@ 123456saas.sh.cn and  chuhuangwei@ 123456saas.sh.cn

                Author information
                http://orcid.org/0000-0001-8846-2506
                Article
                PCE14240
                10.1111/pce.14240
                9305246
                34866195
                779feeb6-5da3-41f5-ba8e-94e90ffde229
                © 2021 The Authors. Plant, Cell & Environment published by John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 19 October 2021
                : 30 July 2021
                : 18 November 2021
                Page count
                Figures: 9, Tables: 0, Pages: 14, Words: 8066
                Funding
                Funded by: Shanghai Technology Research Leader Program
                Award ID: 18XD1424300
                Funded by: Shanghai Science and Technology Innovation Action Plan Project
                Award ID: 21N11900100
                Funded by: China Postdoctoral Science Foundation , doi 10.13039/501100002858;
                Award ID: 2021M692146
                Funded by: Agriculture Research System of Shanghai
                Award ID: 202103
                Funded by: Shanghai Pujiang Program
                Award ID: 20PJ1405900
                Categories
                Original Article
                Original Articles
                Custom metadata
                2.0
                February 2022
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.1.7 mode:remove_FC converted:21.07.2022

                Plant science & Botany
                cell death,clathrin‐mediated vesicle trafficking,disease resistance,lesion mimic mutant,oryza sativa

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