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      Missense mutations in EDA and EDAR genes cause dominant syndromic tooth agenesis

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          Abstract

          Background

          Hypohidrotic ectodermal dysplasia (HED) is the most common form of ectodermal dysplasia and is mainly associated with mutations in the EDA, EDAR, and EDARADD responsible for the development of ectodermal‐derived structures. HED displays different modes of inheritance according to the gene that is involved, with X‐linked EDA‐related HED being the most frequent form of the disease.

          Methods

          Two families with tooth agenesis and manifestations of HED underwent clinical examination and EDA, EDAR, and EDARADD genetic analysis. The impact of the novel variant on the protein was evaluated through bioinformatics tools, whereas molecular modeling was used to predict the effect on the protein structure.

          Results

          A novel missense variant was identified in the EDAR (c.287T>C, p.Phe96Ser) of a female child proband and her mother, accounting for autosomal dominant HED. The genetic variant c.866G>A (p.Arg289His) in EDA, which has been previously described, was observed in the male proband of another family confirming its role in X‐linked HED. The inheritance model of the missense mutation showed a different relationship with X‐linked HED and non‐syndromic tooth agenesis.

          Conclusion

          Our findings provide evidence of variable expression of HED in heterozygous females, which should be considered for genetic counseling, and different modes of inheritance related to tooth development.

          Abstract

          In this study, two families with clinical manifestations of hypohidrotic ectodermal dysplasia (HED) were investigated. The novel missense variant NM_022336.4:c.287T>C (p.Phe96Ser) in EDAR was identified in family A. This finding strongly suggests that the EDAR mutation in exon 4 is the cause of the disease with autosomal dominant inheritance because of its phenotypic manifestation also in heterozygosity and family segregation. The genetic variant c.866G>A (p. Arg289His) in EDA, which has been previously described, was observed in the male proband of another family confirming its role in X‐linked HED. Our findings provide evidence of variable expression of HED in heterozygous females, which should be considered for genetic counseling, and different modes of inheritance related to tooth development.

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          Most cited references30

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          UCSF Chimera--a visualization system for exploratory research and analysis.

          The design, implementation, and capabilities of an extensible visualization system, UCSF Chimera, are discussed. Chimera is segmented into a core that provides basic services and visualization, and extensions that provide most higher level functionality. This architecture ensures that the extension mechanism satisfies the demands of outside developers who wish to incorporate new features. Two unusual extensions are presented: Multiscale, which adds the ability to visualize large-scale molecular assemblies such as viral coats, and Collaboratory, which allows researchers to share a Chimera session interactively despite being at separate locales. Other extensions include Multalign Viewer, for showing multiple sequence alignments and associated structures; ViewDock, for screening docked ligand orientations; Movie, for replaying molecular dynamics trajectories; and Volume Viewer, for display and analysis of volumetric data. A discussion of the usage of Chimera in real-world situations is given, along with anticipated future directions. Chimera includes full user documentation, is free to academic and nonprofit users, and is available for Microsoft Windows, Linux, Apple Mac OS X, SGI IRIX, and HP Tru64 Unix from http://www.cgl.ucsf.edu/chimera/. Copyright 2004 Wiley Periodicals, Inc.
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            SWISS-MODEL: homology modelling of protein structures and complexes

            Abstract Homology modelling has matured into an important technique in structural biology, significantly contributing to narrowing the gap between known protein sequences and experimentally determined structures. Fully automated workflows and servers simplify and streamline the homology modelling process, also allowing users without a specific computational expertise to generate reliable protein models and have easy access to modelling results, their visualization and interpretation. Here, we present an update to the SWISS-MODEL server, which pioneered the field of automated modelling 25 years ago and been continuously further developed. Recently, its functionality has been extended to the modelling of homo- and heteromeric complexes. Starting from the amino acid sequences of the interacting proteins, both the stoichiometry and the overall structure of the complex are inferred by homology modelling. Other major improvements include the implementation of a new modelling engine, ProMod3 and the introduction a new local model quality estimation method, QMEANDisCo. SWISS-MODEL is freely available at https://swissmodel.expasy.org.
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              MutationTaster2: mutation prediction for the deep-sequencing age.

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                Author and article information

                Contributors
                francesca.andreoni@uniurb.it
                Journal
                Mol Genet Genomic Med
                Mol Genet Genomic Med
                10.1002/(ISSN)2324-9269
                MGG3
                Molecular Genetics & Genomic Medicine
                John Wiley and Sons Inc. (Hoboken )
                2324-9269
                18 November 2020
                January 2021
                : 9
                : 1 ( doiID: 10.1002/mgg3.v9.1 )
                : e1555
                Affiliations
                [ 1 ] Department of Biomolecular Sciences University of Urbino Fano Italy
                [ 2 ] Coordinamento Interdipartimentale Malattie Rare Azienda Ospedaliero Universitaria Ospedali Riuniti di Ancona Ancona Italy
                [ 3 ] Clinica Dermatologica Azienda Ospedaliero Universitaria Ospedali Riuniti di Ancona Ancona Italy
                [ 4 ] Genomic Research Centre Cante di Montevecchio Association Fano Italy
                Author notes
                [*] [* ] Correspondence

                Francesca Andreoni, Department of Biomolecular Sciences, University of Urbino, via Arco d’Augusto, 2, Fano, 61032, Italy.

                Email: francesca.andreoni@ 123456uniurb.it

                Author information
                https://orcid.org/0000-0002-4857-8210
                https://orcid.org/0000-0003-3508-3355
                Article
                MGG31555
                10.1002/mgg3.1555
                7963410
                33205897
                7af5c1c1-faa4-47c0-934a-cdcc05a746c8
                © 2020 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals LLC.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 28 October 2020
                : 19 August 2020
                : 29 October 2020
                Page count
                Figures: 5, Tables: 0, Pages: 8, Words: 4750
                Funding
                Funded by: FanoAteneo
                Categories
                Original Article
                Original Articles
                Custom metadata
                2.0
                January 2021
                Converter:WILEY_ML3GV2_TO_JATSPMC version:5.9.9 mode:remove_FC converted:16.03.2021

                ectodermal dysplasia,eda,edar,hypodontia
                ectodermal dysplasia, eda, edar, hypodontia

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