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      The carbohydrate-binding domain of overexpressed STBD1 is important for its stability and protein–protein interactions

      research-article
      * , * , * , * , 1
      Bioscience Reports
      Portland Press Ltd.
      CBM20, endoplasmic reticulum, glucose, glycogen, STBD1, ubiquitination, Atg8, autophagy-related gene 8, BafA1, bafilomycin A1, CAP, catabolite gene activator protein, CBM20, family 20 carbohydrate binding module, CHX, cycloheximide, ER, endoplasmic reticulum, FBS, fetal bovine serum, GABARAP, γ-aminobutyric acid receptor-associated protein, GABARAPL1, GABARAP-like 1, GBE1, glycogen branching enzyme 1, GDE, glycogen debranching enzyme, GFP, green fluorescent protein, GS, glycogen synthase, HA, haemagglutinin, HEK-293T, human embryonic kidney 293T, HSP, heat-shock protein, NEM, N-ethylmaleimide, PTG, protein targeting to glycogen, STBD1, starch-binding domain-containing protein 1, Ub, ubiquitin, WT, wild-type

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          Abstract

          STBD1 (starch-binding domain-containing protein 1) belongs to the CBM20 (family 20 carbohydrate binding module) group of proteins, and is implicated in glycogen metabolism and autophagy. However, very little is known about its regulation or interacting partners. Here, we show that the CBM20 of STBD1 is crucial for its stability and ability to interact with glycogen-associated proteins. Mutation of a conserved tryptophan residue (W293) in this domain abolished the ability of STBD1 to bind to the carbohydrate amylose. Compared with the WT (wild-type) protein, this mutant exhibited rapid degradation that was rescued upon inhibition of the proteasome. Furthermore, STBD1 undergoes ubiquitination when expressed in COS cells, and requires the N-terminus for this process. In contrast, inhibition of autophagy did not significantly affect protein stability. In overexpression experiments, we discovered that STBD1 interacts with several glycogen-associated proteins, such as GS (glycogen synthase), GDE (glycogen debranching enzyme) and Laforin. Importantly, the W293 mutant of STBD1 was unable to do so, suggesting an additional role for the CBM20 domain in protein–protein interactions. In HepG2 hepatoma cells, overexpressed STBD1 could associate with endogenous GS. This binding increased during glycogenolysis, suggesting that glycogen is not required to bridge this interaction. Taken together, our results have uncovered new insights into the regulation and binding partners of STBD1.

          Abstract

          STBD1 is a protein with a carbohydrate-binding domain that is implicated in autophagy and glycogen metabolism. Here we show the carbohydrate-binding domain is crucial for its stability and ability to bind to several glycogen-associated proteins.

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          Most cited references33

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          Regulation of proteasome activity in health and disease.

          The ubiquitin-proteasome system (UPS) is the primary selective degradation system in the nuclei and cytoplasm of eukaryotic cells, required for the turnover of myriad soluble proteins. The hundreds of factors that comprise the UPS include an enzymatic cascade that tags proteins for degradation via the covalent attachment of a poly-ubiquitin chain, and a large multimeric enzyme that degrades ubiquitinated proteins, the proteasome. Protein degradation by the UPS regulates many pathways and is a crucial component of the cellular proteostasis network. Dysfunction of the ubiquitination machinery or the proteolytic activity of the proteasome is associated with numerous human diseases. In this review we discuss the contributions of the proteasome to human pathology, describe mechanisms that regulate the proteolytic capacity of the proteasome, and discuss strategies to modulate proteasome function as a therapeutic approach to ameliorate diseases associated with altered UPS function. This article is part of a Special Issue entitled: Ubiquitin-Proteasome System. Guest Editors: Thomas Sommer and Dieter H. Wolf. © 2013 Elsevier B.V. All rights reserved.
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            Mechanism suppressing glycogen synthesis in neurons and its demise in progressive myoclonus epilepsy.

            Glycogen synthesis is normally absent in neurons. However, inclusion bodies resembling abnormal glycogen accumulate in several neurological diseases, particularly in progressive myoclonus epilepsy or Lafora disease. We show here that mouse neurons have the enzymatic machinery for synthesizing glycogen, but that it is suppressed by retention of muscle glycogen synthase (MGS) in the phosphorylated, inactive state. This suppression was further ensured by a complex of laforin and malin, which are the two proteins whose mutations cause Lafora disease. The laforin-malin complex caused proteasome-dependent degradation both of the adaptor protein targeting to glycogen, PTG, which brings protein phosphatase 1 to MGS for activation, and of MGS itself. Enforced expression of PTG led to glycogen deposition in neurons and caused apoptosis. Therefore, the malin-laforin complex ensures a blockade of neuronal glycogen synthesis even under intense glycogenic conditions. Here we explain the formation of polyglucosan inclusions in Lafora disease by demonstrating a crucial role for laforin and malin in glycogen synthesis.
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              STARCH-EXCESS4 is a laforin-like Phosphoglucan phosphatase required for starch degradation in Arabidopsis thaliana.

              Starch is the major storage carbohydrate in plants. It is comprised of glucans that form semicrystalline granules. Glucan phosphorylation is a prerequisite for normal starch breakdown, but phosphoglucan metabolism is not understood. A putative protein phosphatase encoded at the Starch Excess 4 (SEX4) locus of Arabidopsis thaliana was recently shown to be required for normal starch breakdown. Here, we show that SEX4 is a phosphoglucan phosphatase in vivo and define its role within the starch degradation pathway. SEX4 dephosphorylates both the starch granule surface and soluble phosphoglucans in vitro, and sex4 null mutants accumulate phosphorylated intermediates of starch breakdown. These compounds are linear alpha-1,4-glucans esterified with one or two phosphate groups. They are released from starch granules by the glucan hydrolases alpha-amylase and isoamylase. In vitro experiments show that the rate of starch granule degradation is increased upon simultaneous phosphorylation and dephosphorylation of starch. We propose that glucan phosphorylating enzymes and phosphoglucan phosphatases work in synergy with glucan hydrolases to mediate efficient starch catabolism.
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                Author and article information

                Journal
                Biosci Rep
                Biosci. Rep
                bsr
                BSR
                Bioscience Reports
                Portland Press Ltd.
                0144-8463
                1573-4935
                18 May 2014
                1 July 2014
                2014
                : 34
                : 4
                : e00117
                Affiliations
                *Department of Biochemistry and Molecular Biology, University of Louisville School of Medicine, 319 Abraham Flexner Way, HSC-A 715, Louisville, Kentucky 40202, U.S.A.
                Author notes
                1To whom correspondence should be addressed (email alan.cheng@ 123456louisville.edu ).
                Article
                e00117
                10.1042/BSR20140053
                4076837
                24837458
                88ce0045-f910-4ef1-a37b-d4b10a0f61da
                © 2014 The Author(s) This is an Open Access article distributed under the terms of the Creative Commons Attribution Licence (CC-BY) (http://creativecommons.org/licenses/by/3.0/) which permits unrestricted use, distribution and reproduction in any medium, provided the original work is properly cited.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution Licence (CC-BY) ( http://creativecommons.org/licenses/by/3.0/) which permits unrestricted use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 1 April 2014
                : 26 April 2014
                : 16 May 2014
                Page count
                Figures: 6, References: 38, Pages: 10
                Categories
                Original Paper
                S2

                Life sciences
                cbm20,endoplasmic reticulum,glucose,glycogen,stbd1,ubiquitination,atg8, autophagy-related gene 8,bafa1, bafilomycin a1,cap, catabolite gene activator protein,cbm20, family 20 carbohydrate binding module,chx, cycloheximide,er, endoplasmic reticulum,fbs, fetal bovine serum,gabarap, γ-aminobutyric acid receptor-associated protein,gabarapl1, gabarap-like 1,gbe1, glycogen branching enzyme 1,gde, glycogen debranching enzyme,gfp, green fluorescent protein,gs, glycogen synthase,ha, haemagglutinin,hek-293t, human embryonic kidney 293t,hsp, heat-shock protein,nem, n-ethylmaleimide,ptg, protein targeting to glycogen,stbd1, starch-binding domain-containing protein 1,ub, ubiquitin,wt, wild-type

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