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      Draft Genome Sequence of Rhodoplanes sp. Strain T2.26MG-98, Isolated from 492.6 Meters Deep on the Subsurface of the Iberian Pyrite Belt

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          Abstract

          Rhodoplanes sp. strain T2.26MG-98 was isolated from the deep subsurface of the Iberian Pyrite Belt. We report its draft genome, consisting of 214 contigs with a chromosome of ∼5.6 Mb and a 53.7-kb plasmid.

          ABSTRACT

          Rhodoplanes sp. strain T2.26MG-98 was isolated from the deep subsurface of the Iberian Pyrite Belt. We report its draft genome, consisting of 214 contigs with a chromosome of ∼5.6 Mb and a 53.7-kb plasmid. The chromosome annotation identified 4,994 coding DNA sequences, 1 rRNA operon, and 57 tRNA genes.

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          GenBank

          Dennis A Benson, Ilene Karsch-Mizrachi, David Lipman … (2008)
          GenBank (R) is a comprehensive database that contains publicly available nucleotide sequences for more than 260 000 named organisms, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Most submissions are made using the web-based BankIt or standalone Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the European Molecular Biology Laboratory Nucleotide Sequence Database in Europe and the DNA Data Bank of Japan ensures worldwide coverage. GenBank is accessible through NCBI's retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, begin at the NCBI Homepage: www.ncbi.nlm.nih.gov
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            Study of methanogenic enrichment cultures of rock cores from the deep subsurface of the Iberian Pyritic Belt

            Tânia Alteniza Leandro, Nuria Rodríguez, Patricia Rojas … (2018)
            Two deep boreholes were drilled at 320 and 620 meters below surface in the Iberian Pyritic Belt (IPB) at Peña de Hierro (Huelva, Southwestern Spain). Cores were sampled and used for the establishment of enrichment cultures with methanogenic activity. The cultivable diversity of these enrichments was accessed using different cultivation techniques and several isolates were recovered in pure culture from various depths in both boreholes. Although no archaeal isolates were obtained in pure culture, strict anaerobes and facultative anaerobic bacteria belonging to the phyla Proteobacteria, Firmicutes, Actinobacteria and Bacteroidetes were isolated and identified using the 16S rRNA gene sequence. Analysis of three selected enrichment cultures by amplification of both bacterial and archaeal 16S rRNA gene followed by pyrosequencing revealed further information on the populations enriched. The archaeal sequences obtained from the methanogenic enrichment cultures belonged to the orders Methanosarcinales and Methanocellales. To best of our knowledge this is the first report of enrichment in members of the Methanocellales in a deep terrestrial subsurface ecosystem. Several bacterial populations, predominantly consisting of Firmicutes and Proteobacteria, were also enriched. The prevalent microbial populations enriched as detected by pyrosequencing analysis, as well as the bacterial isolates cultivated were affiliated with known fermentative, sulfate reducing and acetogenic bacteria or methanogenic archaea. Our results show a great diversity in the microbial communities of the IPB deep subsurface.
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              Are there multiple mechanisms of anaerobic sulfur oxidation with ferric iron in Acidithiobacillus ferrooxidans ?

              Jiří Kučera, Eva Pakostova, Jan Lochman … (2016)
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                Author and article information

                Contributors
                David A. Baltrus: Role: Editor
                Journal
                Journal ID (nlm-ta): Microbiol Resour Announc
                Journal ID (iso-abbrev): Microbiol Resour Announc
                Journal ID (hwp): ga
                Journal ID (pmc): mra
                Journal ID (publisher-id): MRA
                Title: Microbiology Resource Announcements
                Publisher: American Society for Microbiology (1752 N St., N.W., Washington, DC )
                ISSN (Electronic): 2576-098X
                Publication date (Electronic): 18 April 2019
                Publication date Collection: April 2019
                Volume: 8
                Issue: 16
                Electronic Location Identifier: e00070-19
                Affiliations
                [a ]Centro de Biología Molecular Severo Ochoa (CBMSO, CSIC-UAM), Universidad Autónoma de Madrid, Cantoblanco, Madrid, Spain
                [b ]Center for Neuroscience and Cell Biology, University of Coimbra, Coimbra, Portugal
                [c ]Centro de Astrobiología (CAB, CSIC-INTA), Torrejón de Ardoz, Madrid, Spain
                University of Arizona
                Author notes
                Address correspondence to R. Amils, ramils@ 123456cbm.csic.es .

                Citation Mariñán N, Martínez JM, Leandro T, Amils R. 2019. Draft genome sequence of Rhodoplanes sp. strain T2.26MG-98, isolated from 492.6 meters deep on the subsurface of the Iberian Pyrite Belt. Microbiol Resour Announc 8:e00070-19. https://doi.org/10.1128/MRA.00070-19.

                Author information
                https://orcid.org/0000-0003-3954-2985
                https://orcid.org/0000-0002-7560-1033
                Article
                Publisher ID: MRA00070-19
                DOI: 10.1128/MRA.00070-19
                PMC ID: 6473132
                PubMed ID: 31000538
                SO-VID: 8eedfdac-8767-491f-a757-4b6f302babc2
                Copyright © Copyright © 2019 Mariñán et al.
                License:

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                Date received : 31 January 2019
                Date accepted : 21 March 2019
                Page count
                Figures: 0, Tables: 0, Equations: 0, References: 19, Pages: 3, Words: 1600
                Funding
                Funded by: Ministerio de Economía y Competitividad (MINECO), https://doi.org/10.13039/501100003329;
                Award ID: GLC2015-66242-R
                Award Recipient :
                Categories
                Subject: Genome Sequences
                Custom metadata
                cover-date April 2019

                Data availability:

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