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      Identification and Mechanism of ABA Receptor Antagonism

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          Abstract

          The phytohormone abscisic acid (ABA) functions through a family of fourteen PYR/PYL receptors, which were identified by resistance to pyrabactin, a synthetic inhibitor of seed germination. ABA activates these receptors to inhibit type 2C protein phosphatases, such as ABI1, yet it remains unclear whether these receptors can be antagonized. Here we demonstrate that pyrabactin is an agonist of PYR1 and PYL1, but unexpectedly an antagonist of PYL2. Crystal structures of the PYL2–pyrabactin and PYL1–pyrabactin–ABI1 complexes reveal the mechanism responsible for receptor-selective activation and inhibition, which enables us to design mutations that convert PYL1 to a pyrabactin-inhibited receptor and PYL2 to a pyrabactin-activated receptor, and to identify new pyrabactin-based ABA receptor agonists. Together, our results establish a new concept of ABA receptor antagonism, illustrate its underlying mechanisms, and provide a rational framework for discovering novel ABA receptor ligands.

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          Most cited references24

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          Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins.

          Type 2C protein phosphatases (PP2Cs) are vitally involved in abscisic acid (ABA) signaling. Here, we show that a synthetic growth inhibitor called pyrabactin functions as a selective ABA agonist. Pyrabactin acts through PYRABACTIN RESISTANCE 1 (PYR1), the founding member of a family of START proteins called PYR/PYLs, which are necessary for both pyrabactin and ABA signaling in vivo. We show that ABA binds to PYR1, which in turn binds to and inhibits PP2Cs. We conclude that PYR/PYLs are ABA receptors functioning at the apex of a negative regulatory pathway that controls ABA signaling by inhibiting PP2Cs. Our results illustrate the power of the chemical genetic approach for sidestepping genetic redundancy.
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            Regulators of PP2C phosphatase activity function as abscisic acid sensors.

            The plant hormone abscisic acid (ABA) acts as a developmental signal and as an integrator of environmental cues such as drought and cold. Key players in ABA signal transduction include the type 2C protein phosphatases (PP2Cs) ABI1 and ABI2, which act by negatively regulating ABA responses. In this study, we identify interactors of ABI1 and ABI2 which we have named regulatory components of ABA receptor (RCARs). In Arabidopsis, RCARs belong to a family with 14 members that share structural similarity with class 10 pathogen-related proteins. RCAR1 was shown to bind ABA, to mediate ABA-dependent inactivation of ABI1 or ABI2 in vitro, and to antagonize PP2C action in planta. Other RCARs also mediated ABA-dependent regulation of ABI1 and ABI2, consistent with a combinatorial assembly of receptor complexes.
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              Abscisic acid-dependent multisite phosphorylation regulates the activity of a transcription activator AREB1.

              bZIP-type transcription factors AREBs/ABFs bind an abscisic acid (ABA)-responsive cis-acting element named ABRE and transactivate downstream gene expression in Arabidopsis. Because AREB1 overexpression could not induce downstream gene expression, activation of AREB1 requires ABA-dependent posttranscriptional modification. We confirmed that ABA activated 42-kDa kinase activity, which, in turn, phosphorylated Ser/Thr residues of R-X-X-S/T sites in the conserved regions of AREB1. Amino acid substitutions of R-X-X-S/T sites to Ala suppressed transactivation activity, and multiple substitution of these sites resulted in almost complete suppression of transactivation activity in transient assays. In contrast, substitution of the Ser/Thr residues to Asp resulted in high transactivation activity without exogenous ABA application. A phosphorylated, transcriptionally active form was achieved by substitution of Ser/Thr in all conserved R-X-X-S/T sites to Asp. Transgenic plants overexpressing the phosphorylated active form of AREB1 expressed many ABA-inducible genes, such as RD29B, without ABA treatment. These results indicate that the ABA-dependent multisite phosphorylation of AREB1 regulates its own activation in plants.
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                Author and article information

                Journal
                101186374
                31761
                Nat Struct Mol Biol
                Nature structural & molecular biology
                1545-9993
                1545-9985
                22 July 2010
                22 August 2010
                September 2010
                1 March 2011
                : 17
                : 9
                : 1102-1108
                Affiliations
                [1 ]Laboratory of Structural Sciences, Van Andel Research Institute, 333 Bostwick Ave., N.E., Grand Rapids, MI 49503, USA
                [2 ]Department of Obstetrics & Gynecology, National University Hospital, Yong Loo Lin School of Medicine, National University of Singapore
                [3 ]Department of Chemistry, University of California at Riverside, Riverside, CA 92521, USA
                [4 ]Department of Botany and Plant Sciences, University of California at Riverside, Riverside, CA 92521, USA
                [5 ]Center for Plant Stress Genomics and Technology, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia
                Author notes
                [*]

                These authors contributed equally to the work described

                Author Contributions K.M., J.L., E.-L.Y., F.T.., S.R.C., J.-K.Z. and H.E.X. conceived the project and designed research; K.M., Y.X., L.-M.N., X.E.Z., F.-F.S., V.C., K.M.S.-P., A.K., F.T., and H.E.X. performed research; K.M., Y.X., L.-M.N., X.E.Z., F.-F.S., V.C., K.M.S.-P., A.K., F.T.., S.R.C., J.-K.Z. and H.E.X. analyzed data; and K.M. and H.E.X. wrote the paper with contributions from all authors.

                Article
                nihpa223258
                10.1038/nsmb.1887
                2933329
                20729862
                8effcb19-0c85-46e0-b244-9d701346330a

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                History
                Funding
                Funded by: National Heart, Lung, and Blood Institute : NHLBI
                Funded by: National Institute of General Medical Sciences : NIGMS
                Funded by: National Institute of Diabetes and Digestive and Kidney Diseases : NIDDK
                Award ID: R01 HL089301-04 ||HL
                Funded by: National Heart, Lung, and Blood Institute : NHLBI
                Funded by: National Institute of General Medical Sciences : NIGMS
                Funded by: National Institute of Diabetes and Digestive and Kidney Diseases : NIDDK
                Award ID: R01 GM087413-02 ||GM
                Funded by: National Heart, Lung, and Blood Institute : NHLBI
                Funded by: National Institute of General Medical Sciences : NIGMS
                Funded by: National Institute of Diabetes and Digestive and Kidney Diseases : NIDDK
                Award ID: R01 DK071662-05 ||DK
                Funded by: National Heart, Lung, and Blood Institute : NHLBI
                Funded by: National Institute of General Medical Sciences : NIGMS
                Funded by: National Institute of Diabetes and Digestive and Kidney Diseases : NIDDK
                Award ID: R01 DK066202-05 ||DK
                Categories
                Article

                Molecular biology
                Molecular biology

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